Clostridioides difficile 630: CDIF630_01011
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Entry
CDIF630_01011 CDS
T03885
Symbol
speB
Name
(GenBank) agmatinase
KO
K01480
agmatinase [EC:
3.5.3.11
]
Organism
pdc
Clostridioides difficile 630
Pathway
pdc00330
Arginine and proline metabolism
pdc01100
Metabolic pathways
pdc01110
Biosynthesis of secondary metabolites
Module
pdc_M00133
Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
CDIF630_01011 (speB)
Enzymes [BR:
pdc01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.3 In linear amidines
3.5.3.11 agmatinase
CDIF630_01011 (speB)
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Motif
Pfam:
Arginase
Motif
Other DBs
NCBI-ProteinID:
AJP10563
UniProt:
Q18A84
Structure
PDB
PDBj
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Position
1057540..1058418
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AA seq
292 aa
AA seq
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MKNNFYHMNTFMSMDKNYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPF
LDLDLEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKA
VHEKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWDIVGDNKIFQFGIRSGTKEEFK
FATEEKHTYMEIGGIDTFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREF
QEIFKIIKNSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKIK
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataatttctatcatatgaacacttttatgagtatggacaaaaattatgaagaa
tctaatcttatagtatttggtgttggatttgatggaactacttctaacagacctggggct
agatttgcaagtagctctatgagaaaagaattttacggtcttgagacatacagtcctttt
ttagatttggatttagaggattataatatatgtgattatggagatttagaaattagtgtt
ggaagtacagaacaagtcttaaaagaaatctatcaagagacatataagattgttagagat
tcaaaggtaccctttatgattggaggagagcatttagttacattaccagcctttaaagca
gtacatgaaaagtacaatgatatatatgtaattcattttgatgcccatactgatttgagg
gaagaatataataatagtaaaaattctcatgcaacagtaattaaaagaatatgggatatt
gtaggtgataataaaatatttcaatttggtataaggtctgggacaaaagaagaatttaaa
tttgctacagaagaaaaacacacatacatggaaataggaggaatagatacatttgaaaat
atagttaacatgctaaatggaaagaatatttatctaactatagatttagatgtattggat
gcatctgtgtttccaggaacaggtacaccagaacctggtggtgtaaattatagagagttt
caagagatttttaagattataaaaaactctaatataaatatagttggttgtgacattgta
gagttaagccctgattacgatacaacaggtgtatcgacagttatagcttgtaaaatccta
agagagttatgcttaataatatctgataaaattaaatag
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