Clostridioides difficile 630: CDIF630_01443
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Entry
CDIF630_01443 CDS
T03885
Name
(GenBank) ribonuclease J family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pdc
Clostridioides difficile 630
Pathway
pdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDIF630_01443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdc03019
]
CDIF630_01443
Messenger RNA biogenesis [BR:
pdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDIF630_01443
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AJP10985
UniProt:
Q18BF6
LinkDB
All DBs
Position
1481314..1482990
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AA seq
558 aa
AA seq
DB search
MQLFKKNTNKIKVMALGGLNEVGKNMTVVEYKDEIIVIDAGLSFPEDEMLGVDIVIPDIT
YLVKNRDKIKGIFITHGHEDHIGALPYILKKINVPVYGARLSIGLIQVKLKEHKMNNVKL
NVIGPRQVIKLDNMEVEFLKNNHSIPDAYSIAIHTDQGIIYHTGDFKIDLTPIDGDVMDM
HRICELSKKGVLLMLADSTNAEKPGFTMSEKTVGVGLDELFAKGNGRRIIVATFASNIHR
LQQIINTAEKFNRKVAISGRSMVNVVGVAKELGYLDISDDMLIDLNDICKYEDSELVIIT
TGSQGEPMSALARMAFSEHKKVEIKSGDLVIISAHPIPGNEKLISRVINFLFEKGAEVVY
SDIADIHVSGHACQEELKLIHALVRPKFFMPAHGEYRMLKRHAEIAEQLGMDKENIFVMQ
TGDVLELDKNSAKVANRIQTGNILVDGLGVGDVGNIVLRDRKHLSEDGLMIVVVTISKDE
GKVLAGPDIISRGFVYVRESEDLMDGAKDIIKNVLNECEEKNIKEWAYLKNNIKENLKEY
LYQKTKRNPMILPIIMEV
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcaattgttcaaaaagaacaccaacaagataaaggtaatggccttgggtggacttaac
gaagttggaaaaaatatgactgttgttgagtataaagatgaaataattgttatagatgct
ggacttagttttccagaggatgaaatgttaggagtagatatagttataccagatataact
tatttagtaaaaaatagggataaaataaagggtatatttattacacatggacatgaagac
catataggagctcttccatatatattaaagaaaataaatgtacctgtatatggggcaaga
cttagtataggtcttatacaagtaaaacttaaagaacataaaatgaataatgttaagtta
aatgttataggtcctagacaagttataaagcttgataatatggaagtagagtttttgaaa
aataaccatagtataccagatgcttactctattgcaatacacacagaccaaggtataata
taccacacaggagattttaagattgacttgactcctattgatggagatgttatggatatg
catagaatctgtgagttgagcaaaaaaggagttcttttaatgctggcagatagtactaat
gcagaaaaaccaggatttactatgtctgaaaagactgttggggtaggtcttgacgaatta
tttgcaaaaggaaatggcagaagaattatagttgctacctttgcatccaacatacacaga
ttacaacaaataataaatactgctgaaaagtttaatagaaaagttgctatatcaggtcgc
tcaatggtcaatgtagttggagttgcaaaagaattaggatacctagatatttctgatgac
atgcttatagatttaaatgatatatgtaagtatgaagatagtgaattagtgataataaca
actggttcacaaggtgaacctatgtcagctcttgctagaatggctttttcagagcacaaa
aaagtagaaataaagagtggcgatttagttataatatctgctcatccaataccaggaaat
gaaaaattaatatcaagagtaatcaatttcttatttgaaaaaggagcagaagtagtatac
agtgatatagctgatatacacgtttctggacatgcctgtcaagaagaattaaaacttata
catgcattagttagaccaaagttttttatgccagctcatggtgaatatagaatgttaaaa
agacatgctgaaatagctgaacagcttggtatggataaagaaaatatttttgtcatgcaa
acaggagatgttttagaattagataaaaattctgctaaggtagcaaaccgtatacaaaca
ggaaacatattagttgatggtctaggagtaggcgatgtaggtaatatagttttaagggat
agaaagcatttatcagaagatggtcttatgatagttgtagttactatttccaaggatgag
ggtaaggtcttagcaggtccagatataatttccagaggattcgtatatgtaagagagtca
gaagatttaatggatggagcaaaggatataattaagaatgttctaaatgaatgtgaagag
aaaaatattaaagaatgggcttatttaaagaataatattaaagaaaacctaaaagaatat
ttatatcaaaaaactaaacgaaatccaatgatacttcctatcataatggaagtataa
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