Clostridioides difficile 630: CDIF630_01485
Help
Entry
CDIF630_01485 CDS
T03885
Name
(GenBank) RNase Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pdc
Clostridioides difficile 630
Pathway
pdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDIF630_01485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdc03019
]
CDIF630_01485
Messenger RNA biogenesis [BR:
pdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDIF630_01485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AJP11027
LinkDB
All DBs
Position
1525735..1527297
Genome browser
AA seq
520 aa
AA seq
DB search
MGLLTKEVDVIDSVVMIVIGAAVGIIAGYFVRKNISEAKIGQAENLAKEIIDKAHHDSET
VQKEKLLEAKEEIHKWRTEAERENRERRTEVQKYEKRVVQKEEVLDRKLQNLESKEVNLS
EKLKVVEKKEEEVEVIKTQQLEKLESISGITSDKAKEIILTNAERDVRREMSIMIKEIES
QAKEEADKKSREIIGYAIQKCAADHVAETTVTVVSLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRREIARIALEKLIADGRIHPARIEEMVEKARKEVDNIIK
EYGEQAAFETSVHGIHPELIRLLGRLNYRTSYGQNVLKHSIEVAHIAGIMAAEIGADIRL
AKRAGLLHDIGKAVDHEMEGTHVEIGMDLLRRYKESKEVIHAMSTHHGDYEPQTVEAVLV
TAADAISAARPGARRETLEAYIKRLEKLEEIANSYEGVEKSFAIQAGREIRIMVKPEAIN
DEEIHLLARDMTKKIEDELEYPGQIKVSIIRETRAIEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgggattattaacgaaggaggtggatgtcatagatagtgtagtaatgattgtaataggt
gcagctgttggtattatagctggatattttgttagaaaaaatatatctgaagcaaaaatt
ggacaagctgaaaacttggccaaagaaataatagataaagcacaccacgactcagaaaca
gtacaaaaagaaaaattactagaagctaaagaagagatccataagtggagaacagaagct
gaaagagaaaacagagaaagaagaacagaagtacaaaagtatgaaaaaagagtagtacaa
aaagaagaagtcttagatagaaaattacaaaatttagaatctaaagaagtaaacctaagt
gaaaaattaaaggtagtggaaaagaaagaagaagaagttgaagtaataaaaactcaacag
ttagaaaaattagaaagtatatcaggaattacttctgataaggccaaagaaatcatctta
accaatgcggagagagatgtaagacgtgaaatgtctataatgataaaagagatagaaagt
caagctaaagaagaagctgataagaaatcaagagaaattataggatatgcaattcaaaaa
tgtgcagcagatcacgtagccgaaactactgtaacagtagtaagcttgcctaatgatgaa
atgaaaggtagaataataggtagggaaggtagaaatataaggactttagaaaccttaaca
ggtatagaccttataatagatgacactccagaagccgtaattttatcaggatttgatcca
ataagaagagaaattgcaagaattgctctagaaaaattaatagcagatggaagaatacat
ccagctagaattgaagaaatggttgaaaaggcgagaaaagaagttgacaatattataaaa
gaatatggtgaacaagctgcatttgaaactagtgtacatgggattcatccggaattaata
agattattaggtagacttaactatagaactagttatggacaaaatgtacttaaacattct
atagaagttgctcatatagctggtataatggctgctgaaataggagcagatattagattg
gctaagagggcaggtttattacatgatataggtaaggctgtagaccatgaaatggaaggt
acacatgttgaaataggtatggatttacttagacgttataaagagtctaaagaagttata
catgccatgagtactcatcatggagattacgagcctcaaacagtagaggctgtattagtt
acagcagcagatgcaatatcagctgctagacctggtgcgagaagagaaactttagaagca
tatataaagagacttgaaaaattagaagaaatagctaattcatatgaaggtgtagaaaaa
tcatttgctatacaagctggtagagaaataagaataatggtaaaaccagaagctataaat
gatgaagaaatacatctattggctagagatatgactaagaaaatagaggatgaacttgaa
tatcctggacaaataaaagtaagcataataagagaaacaagagctatagagtatgcgaag
taa
DBGET
integrated database retrieval system