KEGG   Clostridioides difficile 630: CDIF630_01485
Entry
CDIF630_01485     CDS       T03885                                 
Name
(GenBank) RNase Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
pdc  Clostridioides difficile 630
Pathway
pdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDIF630_01485
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdc03019]
    CDIF630_01485
Messenger RNA biogenesis [BR:pdc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CDIF630_01485
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD KH_KhpA-B
Other DBs
NCBI-ProteinID: AJP11027
LinkDB
Position
1525735..1527297
AA seq 520 aa
MGLLTKEVDVIDSVVMIVIGAAVGIIAGYFVRKNISEAKIGQAENLAKEIIDKAHHDSET
VQKEKLLEAKEEIHKWRTEAERENRERRTEVQKYEKRVVQKEEVLDRKLQNLESKEVNLS
EKLKVVEKKEEEVEVIKTQQLEKLESISGITSDKAKEIILTNAERDVRREMSIMIKEIES
QAKEEADKKSREIIGYAIQKCAADHVAETTVTVVSLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVILSGFDPIRREIARIALEKLIADGRIHPARIEEMVEKARKEVDNIIK
EYGEQAAFETSVHGIHPELIRLLGRLNYRTSYGQNVLKHSIEVAHIAGIMAAEIGADIRL
AKRAGLLHDIGKAVDHEMEGTHVEIGMDLLRRYKESKEVIHAMSTHHGDYEPQTVEAVLV
TAADAISAARPGARRETLEAYIKRLEKLEEIANSYEGVEKSFAIQAGREIRIMVKPEAIN
DEEIHLLARDMTKKIEDELEYPGQIKVSIIRETRAIEYAK
NT seq 1563 nt   +upstreamnt  +downstreamnt
ttgggattattaacgaaggaggtggatgtcatagatagtgtagtaatgattgtaataggt
gcagctgttggtattatagctggatattttgttagaaaaaatatatctgaagcaaaaatt
ggacaagctgaaaacttggccaaagaaataatagataaagcacaccacgactcagaaaca
gtacaaaaagaaaaattactagaagctaaagaagagatccataagtggagaacagaagct
gaaagagaaaacagagaaagaagaacagaagtacaaaagtatgaaaaaagagtagtacaa
aaagaagaagtcttagatagaaaattacaaaatttagaatctaaagaagtaaacctaagt
gaaaaattaaaggtagtggaaaagaaagaagaagaagttgaagtaataaaaactcaacag
ttagaaaaattagaaagtatatcaggaattacttctgataaggccaaagaaatcatctta
accaatgcggagagagatgtaagacgtgaaatgtctataatgataaaagagatagaaagt
caagctaaagaagaagctgataagaaatcaagagaaattataggatatgcaattcaaaaa
tgtgcagcagatcacgtagccgaaactactgtaacagtagtaagcttgcctaatgatgaa
atgaaaggtagaataataggtagggaaggtagaaatataaggactttagaaaccttaaca
ggtatagaccttataatagatgacactccagaagccgtaattttatcaggatttgatcca
ataagaagagaaattgcaagaattgctctagaaaaattaatagcagatggaagaatacat
ccagctagaattgaagaaatggttgaaaaggcgagaaaagaagttgacaatattataaaa
gaatatggtgaacaagctgcatttgaaactagtgtacatgggattcatccggaattaata
agattattaggtagacttaactatagaactagttatggacaaaatgtacttaaacattct
atagaagttgctcatatagctggtataatggctgctgaaataggagcagatattagattg
gctaagagggcaggtttattacatgatataggtaaggctgtagaccatgaaatggaaggt
acacatgttgaaataggtatggatttacttagacgttataaagagtctaaagaagttata
catgccatgagtactcatcatggagattacgagcctcaaacagtagaggctgtattagtt
acagcagcagatgcaatatcagctgctagacctggtgcgagaagagaaactttagaagca
tatataaagagacttgaaaaattagaagaaatagctaattcatatgaaggtgtagaaaaa
tcatttgctatacaagctggtagagaaataagaataatggtaaaaccagaagctataaat
gatgaagaaatacatctattggctagagatatgactaagaaaatagaggatgaacttgaa
tatcctggacaaataaaagtaagcataataagagaaacaagagctatagagtatgcgaag
taa

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