Clostridioides difficile 630: CDIF630_03009
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Entry
CDIF630_03009 CDS
T03885
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pdc
Clostridioides difficile 630
Pathway
pdc03410
Base excision repair
pdc03430
Mismatch repair
pdc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDIF630_03009 (recJ)
03430 Mismatch repair
CDIF630_03009 (recJ)
03440 Homologous recombination
CDIF630_03009 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdc03400
]
CDIF630_03009 (recJ)
DNA repair and recombination proteins [BR:
pdc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CDIF630_03009 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CDIF630_03009 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDIF630_03009 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
LDcluster4
ssDNA-exonuc_C
Motif
Other DBs
NCBI-ProteinID:
AJP12493
UniProt:
Q183I1
LinkDB
All DBs
Position
complement(3170998..3173448)
Genome browser
AA seq
816 aa
AA seq
DB search
MKKWILKYKGKIEESEFSKKLNISPEICQILKNRGICTEKDSEIFMNPSLDYLRDPFLMK
DMQKAVDRIKLAVEKNEKIWIYGDYDVDGVSSTSILCLYFKSIGYNVDYYIPNRLEEGYG
INEDAIKLISSRGCDLIISVDCGITSVSEVNTANDLGIDVIITDHHECQSEIPSAFAVIN
PKQEDCNYPFDSLCGCGVAFKMIQALTPKEEFKTSMYNYLEIVTLATICDIVPLIDENRI
IVKNGLKSMKEGKNIGLRELIKVCGVESDKIGSSHIGFAIGPRINASGRLGYSYLGVELF
TTQSQEEAVEIASILEEKNNERQMIEAKMYHEAEEMLKSNSRYNDDKVLVLAKEGWQHGI
IGIVASKLTEKYYKPTILLGIENGEATGSARSIKGFNIFEALIKCKDLMTKFGGHEQAAG
LSLDSDNVEILANEINKFADYNLTEDDMIENVNVEFELQENVINLNLVEELHKLEPFGLN
NPNPRFIVRNYILKDLKVIGKNQQHLKLSIEKEKSYECIGFNMSHLKSMYKVGDKVDVLF
QLDENNYMGNRKVQFLLKDIRLARPKSASNDKLSLKLMSKIIPKDTQSLYNISVSDFELF
DGNTDINIFDYFEKDTLIISNSINGFYRAMSDISLIDLDFNINYNIIEDDSKNTDKLELI
FSPNIDKIDLKRYNNIILYDYLYNKGEYSYIYENKREESEIIKYYNKTDLLYLKNVVSNI
VPSRDEFITIYKQALIKKEIDLDMVNIRETFNVIPLKFFTILNVFRELNLLDFNLNYEKN
SVLIRILPKPQKKLDLNESLILNNLKNLEKQYNSSY
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaatggatattgaagtataaaggtaagatagaggaaagtgaatttagcaaaaaa
cttaatatttccccggaaatctgccaaattttaaaaaatagagggatatgtactgaaaaa
gattcagagatatttatgaatccatctttagattatttaagagacccttttttaatgaaa
gatatgcaaaaagctgttgatagaataaagttagcagttgagaagaacgaaaaaatttgg
atttacggagattatgatgttgatggtgtatcatctacatctatcttgtgcttatatttt
aagagtataggttacaatgttgattactatattcctaatagattagaagaagggtatggt
ataaatgaagatgctattaagcttataagctctaggggctgtgacttgattataagtgtt
gactgtggaattacatcagtgtctgaggtcaatacagcgaatgatttgggcatagatgtt
ataattacagaccatcatgaatgtcaaagtgaaattccatcagcctttgcagtaataaat
ccaaaacaagaagattgtaattatccatttgattcactatgtggatgtggtgtagcattt
aaaatgattcaagccttgactccaaaagaagaatttaaaactagtatgtataattattta
gaaatagtaacactagcaactatttgtgatattgttccacttatagatgaaaatagaata
attgtaaaaaatggtttaaaatcaatgaaagaaggcaaaaatattggattaagggagctt
ataaaagtttgtggtgtagaaagtgataagataggttcttctcatataggttttgcaata
ggtcctaggataaatgcttcaggtcgattgggatattcttacttaggagtagagctattt
actactcaatcacaagaagaggcagtagaaatagctagtatattggaagaaaaaaataat
gaaagacagatgatagaagctaagatgtatcatgaagctgaagaaatgctaaagtctaat
agcagatacaatgatgacaaggtgttggttttagctaaagagggttggcaacatggaata
ataggaattgtagcatcaaagttaactgaaaaatactacaaaccaacaattcttctaggt
atagaaaatggggaggctactggttcagcgaggtcaataaaaggatttaatatatttgaa
gctctcataaagtgcaaagacttgatgactaagtttggtggtcatgaacaagcagcaggg
ttatccttggattcagacaatgtagaaattttagcaaatgaaataaataaatttgcagat
tataatttaactgaagatgatatgatagagaatgtaaatgtcgagtttgaattacaagaa
aatgtaataaatttaaatcttgtagaagaattacataagttagaaccctttggattaaat
aatcctaatcctagatttatagttagaaattatattttaaaagatttgaaagttataggt
aagaatcaacaacatctgaaattgagtatagaaaaagagaaaagctatgaatgtatagga
tttaatatgagtcatttaaaatcaatgtataaagtaggagacaaagtagatgtactattc
caattagatgaaaataactatatgggaaataggaaagtacaatttttacttaaagatata
cgattagctcgacctaaaagtgcaagtaatgacaaactttcattgaaattaatgtcaaaa
ataataccaaaagatactcaaagcctgtataatatatctgtgtctgattttgaattattt
gatggaaatacagatataaatatatttgattattttgaaaaagatacactaataatatct
aattctataaatggattttatagagcaatgtcagatatatcacttatagatttggatttt
aacataaattacaatattattgaagatgatagcaaaaatactgataaattagagcttata
ttttctcctaatattgataaaatagacttaaaaagatataataatattattctttatgat
tatttatacaataaaggcgaatattcgtatatatatgagaataaaagagaagaaagtgaa
attataaaatattataataaaacagacctattatatttaaagaatgtagttagtaatata
gttccatcaagagatgaatttataacaatttataaacaagcactcataaaaaaagaaatt
gatttggatatggtaaatataagggaaacttttaatgtaattccattaaagttttttacg
atattaaatgtatttagagaattaaatttacttgactttaatttaaattatgaaaaaaat
tctgtactcataagaatattgccaaaaccacagaaaaaattagacttaaatgagagttta
atactcaataatctaaaaaatttagaaaaacaatacaatagcagttattag
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