Clostridioides difficile 630: CDIF630_03541
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Entry
CDIF630_03541 CDS
T03885
Symbol
prdR
Name
(GenBank) transcriptional regulator, sigma-54-dependent
Organism
pdc
Clostridioides difficile 630
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Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
CBS
Sigma54_activ_2
HTH_8
PAS_9
AAA_5
AAA
PAS
PAS_4
Mg_chelatase
MCP-like_PDC_1
AAA_16
HTH_30
nSTAND3
PAS_7
OB_PDCD11
PAS_8
HTH_psq
Motif
Other DBs
NCBI-ProteinID:
AJP13017
UniProt:
Q17ZY8
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Position
complement(3780661..3782421)
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AA seq
586 aa
AA seq
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MFSIPEVKKVEEVMDTKFTTIDEDTRIEDAIKEMIKSNTKTLMVIDSSDQLKGIISMTDI
HNLYEMHKKYEGQPVKLIMKKDVIYVNEGLTLDECRDIMILKNIGILPVLRDNKIIGVLK
QEHIRDYLYMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIKSEDIVGR
PMNEFLENTISEKVLNSKVGMSDLYFTDKKENMYALVHANPIFYKEEFIGVVCTEVDVTE
AKILALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVARTNSSIFIW
GESGTGKEVFARAIHDYSERKGQFIPVNCSAIPNELFESEFFGYESGAFTGASKKGRIGI
FELAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISATNKDLSKM
VKAEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLTISKDVIDI
FQNYRWKGNIRELKNTIENIVVLSQNSKIDVDDVPSYMMDSTNNSTEEEEYPLDLTKATQ
KIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKIDVSKI
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgataccagaagtaaaaaaagtagaagaggtaatggatacaaaatttacaact
atagacgaagacacaagaattgaagatgcaataaaagaaatgataaaaagcaacacaaaa
actctaatggtaatagattcatctgaccaattaaaaggcattatatccatgacggatata
cataatctttatgagatgcataaaaagtatgaaggtcaaccagtaaaacttataatgaag
aaggatgtaatatatgtcaacgaaggtttaaccttagatgaatgtagagatataatgata
ttaaaaaatatagggattcttcctgttcttagagataataaaattattggagttctaaaa
caagagcacattagggactatctatatatgcatttagaagattatggattgactttgaag
tatattataggtcaaattaaagaaggaatttgtgctataaataacgaaggtgttgttatc
ttgtggaataagtttatggaggaaaggtatgatataaagtctgaagatatagttggtcga
ccgatgaatgaatttttggaaaatactatttcagaaaaagtactaaatagtaaagttgga
atgagtgacttgtattttacagataaaaaagaaaatatgtatgcattagttcatgcaaat
cctatattttataaagaagaatttatcggtgttgtatgtacagaagttgatgttacagaa
gctaagatattagctcttgaacttgaaaaagtaaatgatacattaaaatatctaaagaac
gaagtcaaaaatttatctaaaggtagttttgataagattttaggtaaaagttataaattg
gaaaaatcgaaagcgattgcaaaacaagtggctagaacaaatagtagtatatttatttgg
ggcgaaagtggtacaggtaaagaagtatttgcaagagctattcatgattatagtgagaga
aaagggcaatttatacctgttaactgtagtgccataccaaatgagttatttgaaagtgag
ttttttgggtatgaatcaggtgcatttacaggagcaagtaaaaagggtcgaataggtata
tttgaacttgcaaaagatggaactgtatttttagatgaaattgccgatttacctcttagt
atgcaagcaaagttgcttagagtattacaggaaaaagaaataagaagagttggtggagat
accacaataaaaataaatcctagaataatatcagctaccaataaagatttgagtaaaatg
gtaaaggcagaaaaatttagagaagatttatactatagattaaatgttgttgaaataaag
attcctccacttagagagagaaaagaagacataggattattggttcatagctttttagag
gagatatgtaaacaaaataataagcctgttcttacaattagcaaagatgtaatagatata
tttcagaattatagatggaaaggtaatattagagaattaaaaaatacgattgaaaatatt
gttgtattgtcacaaaattctaaaatagatgtggatgatgtaccaagttatatgatggat
tctacaaataatagtactgaagaagaagagtatcctttagatttaacgaaggcaactcaa
aaaattgaaataaagaatataaccaaggcacttaaaatgtctaatggaaataaagctaaa
gcagctaagatattaaatatacccagaacaactttgtattataagatagaccaatacaaa
atagatgtgtctaaaatatga
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