Clostridioides difficile 630: CDIF630_03799
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Entry
CDIF630_03799 CDS
T03885
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pdc
Clostridioides difficile 630
Pathway
pdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDIF630_03799 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdc03021
]
CDIF630_03799 (rho)
03019 Messenger RNA biogenesis [BR:
pdc03019
]
CDIF630_03799 (rho)
Transcription machinery [BR:
pdc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CDIF630_03799 (rho)
Messenger RNA biogenesis [BR:
pdc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CDIF630_03799 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_25
OB_RNB
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
AJP13264
UniProt:
Q180Y6
LinkDB
All DBs
Position
complement(4058892..4060481)
Genome browser
AA seq
529 aa
AA seq
DB search
MILDDKVLEGLGSKTLVELREIAKELKIKSITTYKKNELIEIINSKSKNEEKVNEETKEK
NEDIKEDIKNRKENIERESIEKEVEYKSPTKSYNKKEIDTQNISQNQEHRNQRNDYNKTT
SVNDSNKSSNISNRMVRNNNKNYYMPKQVDESKIVDEFNTSKEDEVVGVLEILPDGFGFL
RGSNYLSTEGDVYVSPSQIRRFNMKTGDKIKGITRHPKSGEKFRALLYVQKINDENPDTA
IQRNAFETLTPIFPEERLTLETNRNEIATRIIDLISPIGKGQRGLIVAPPKAGKTVLLKS
VANSIAKNHPNVELIVLLIDERPEEVTDMKESIEGDVIYSTFDQVSSHHVKVAEMVLNRA
QRLVEHGKDVVILLDSITRLARAYNLTISPTGRTLSGGIDPGALHGPKKFFGAARNIRQG
GSLTILGTALVETGSRMDDVIFEEFKGTGNMELHLDRKLAEKRIFPAIDIYKSGTRRDDL
LLDDEEKTALWRLRREMSNNSVMEITDKVIELIKRTKDNKEFVKSIKNL
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
ttgattttagatgataaagtattagaaggattaggtagtaagaccttagttgagctacga
gagatagctaaagaattaaaaataaaatcaattactacatataagaaaaatgagttaatt
gagattataaattccaaaagtaaaaatgaggaaaaagtaaacgaagagactaaagaaaaa
aatgaagatattaaagaagacataaagaatagaaaagaaaatatagagcgtgaaagtata
gaaaaagaagttgaatataagagccctaccaaatcatacaacaagaaagaaatagatacc
caaaatatttcccaaaaccaagaacatagaaatcaaagaaatgactataataagacaacg
agtgtaaatgatagtaataagtcatcaaatatatctaatagaatggtcagaaataataat
aaaaactattatatgcctaaacaagttgatgaatctaagatagtagatgaatttaacaca
tcaaaagaggatgaagtagtaggtgtacttgaaattctaccagatggatttggtttttta
agaggttcaaattatttgtctactgaaggagatgtttacgtttcaccatctcaaataaga
agatttaatatgaaaacaggagacaagattaagggaataactagacatccaaaaagtgga
gagaaatttagagcacttttatatgttcaaaaaataaatgatgaaaaccctgacacagct
atacaaagaaatgcgtttgagacattaacaccaatatttccagaagaacgacttacactg
gaaactaatagaaatgaaatagctacaagaattatagatttaatttcacctataggaaaa
ggacaaagaggattgatagtagcacctccaaaagctgggaaaacagttcttttaaaaagc
gttgcaaatagcatagctaaaaatcatccaaatgttgaacttatagtactccttatagat
gaaagaccagaggaagttactgatatgaaagaatctattgaaggagacgttatatattcc
acttttgaccaagtatcaagtcatcatgtcaaggttgcagagatggtgttaaatagagct
caaagattagttgaacatggtaaagatgtagtaattttactagatagtataactagattg
gcaagggcatataaccttacaatatctcctacaggtagaactttatctggaggtattgac
cctggtgcacttcatggacctaaaaagttctttggtgcagcaaggaatattagacagggt
ggttctttgacaatattaggaacagcattggttgaaactggttctaggatggatgatgta
atatttgaggaatttaaaggtacaggaaatatggagctacatttagatagaaaattagca
gaaaaaagaatattccctgcaatagatatttacaagtctggtacaagaagagatgattta
ttgcttgatgatgaagaaaagactgctctttggagattaagaagagaaatgagtaataat
tcagtaatggaaattacagataaagtcattgaacttataaagagaactaaggacaataaa
gagtttgtaaaatcaataaagaatttgtaa
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