Pseudoxanthomonas daejeonensis: MNQ95_00385
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Entry
MNQ95_00385 CDS
T08066
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pdd
Pseudoxanthomonas daejeonensis
Brite
KEGG Orthology (KO) [BR:
pdd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdd03009
]
MNQ95_00385 (rlmD)
Enzymes [BR:
pdd01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MNQ95_00385 (rlmD)
Ribosome biogenesis [BR:
pdd03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MNQ95_00385 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
RrnaAD
MTS
TRAM
Cons_hypoth95
Methyltr_RsmB-F
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_23
Methyltransf_15
UPF0020
CMAS
PrmA
Ubie_methyltran
DOT1
Motif
Other DBs
NCBI-ProteinID:
UNK57616
LinkDB
All DBs
Position
complement(79050..80399)
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AA seq
449 aa
AA seq
DB search
MAGPDRPRSLRHVARFDRTPFQIQILDLSHDGRGVARRDDGKAVFISGALPGETVLAEPT
ARSKRFDEARTLEVLEASPERVQPRCPHFGTCSGCVLQHLAEDRQIIAKQRVLLENLERI
GKVSPGAVLPPLTGDSWGYRRKGRFSVRRVNKKDKTLVGFRELDPRFVADLRECHTVVPE
IGMKVQALATLVDGLEAREHIPQIEFIAGDEAIVLTLRHLQPLSEADRAALAAFGREQGF
TIFLQPKGIDTVHPLEGEAPKLSFRLPQWDVELAFEPLDFIQVNARLNQSMIARALEMLD
LQPGHRVLDLFCGLGNFTLPIARQVREVVGVEGDAGLVARARANAQRNGLANAQFFAADL
AQDQRGTPWMRQGFDRLLLDPPRSGADEVLKQLPLKDIERIVYVSCHPGSLARDAGFLVH
ERGYRLVSAGVMDMFPHTAHVESIALFER
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggccggccctgaccgcccccgcagccttcgccacgtggcccgattcgaccgtaccccg
ttccagatccagatcctcgacctcagccacgatggacgcggtgtcgcacgccgcgacgac
ggcaaagccgtattcatctcgggggcgctgcccggcgagaccgtcctggccgagcccacc
gcacgcagcaagcgcttcgacgaggcccgcacgctggaggtgcttgaggcgtcgcccgag
cgcgtccagccgcgctgcccgcacttcggcacctgcagcggctgcgtgctgcagcacctg
gccgaggaccggcagatcatcgccaagcagcgcgtgctgctggagaacctggagcggatc
ggcaaggtcagccccggcgcggtgctgccgccgctgaccggcgacagctggggctaccgg
cgcaagggccggttctcggtgcgccgggtcaacaagaaggacaagaccctggtcggcttc
cgcgagctggatccgcgcttcgtcgccgacctgcgcgaatgccacacggtggtccccgag
atcgggatgaaggtgcaggccctggccacgctggtcgacgggctggaggcgcgcgagcac
atcccgcagatcgagttcatcgccggcgacgaggccatcgtgctgaccctgcgccacctg
cagccgctgtccgaagccgatcgcgcggcgctggccgcgttcgggcgcgagcagggattc
accatcttcctgcagcccaagggcatcgacacggtgcatccgctggaaggcgaggcgccc
aagctgtcgttccggctgccgcagtgggacgtggaactcgccttcgagccgctggatttc
atccaggtcaatgcgcggctcaaccagtcgatgatcgcgcgggcgctggagatgctcgac
ctgcagcccgggcaccgggtcctggacctgttctgcggcctgggcaacttcaccctgccg
atcgcacgccaggtgcgcgaggtggtgggcgtggagggcgatgccgggctggtcgcgcgt
gcgcgcgccaacgcccagcgcaacgggctggccaacgcgcagttcttcgccgctgacctg
gcccaggaccagcgcggcacgccgtggatgcggcagggcttcgaccggctgctgctggac
ccgccgcgctcgggcgccgacgaggtgctcaagcagctgccgctcaaggacatcgagcgg
atcgtctatgtcagctgccatcccggctcgctggcgcgcgacgccgggttcctggtccac
gagcgcggctaccgactggtgtcggccggcgtgatggacatgttcccgcataccgcgcac
gtggagagcatcgcgctgttcgagcgctga
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