Pseudoxanthomonas daejeonensis: MNQ95_02615
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Entry
MNQ95_02615 CDS
T08066
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdd
Pseudoxanthomonas daejeonensis
Pathway
pdd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MNQ95_02615 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdd03021
]
MNQ95_02615 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdd03400
]
MNQ95_02615 (rpoC)
Enzymes [BR:
pdd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MNQ95_02615 (rpoC)
Transcription machinery [BR:
pdd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MNQ95_02615 (rpoC)
DNA repair and recombination proteins [BR:
pdd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MNQ95_02615 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UNK58026
LinkDB
All DBs
Position
complement(552161..556381)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVTEPGLTPLDRRQLLTEEQFLTARQEHGDDFDAAM
GAEAIYELLRTIDLQAEMARLREEIAATGSETKLKRLTKRIKLVEAFIDSGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANVAEVKRAYDNR
VVELHAKVKVRIVEVVTDEAGNKQKSTSIVDTTVGRALLAEILPEGLPFALANTELTKKN
ISRLINSCYRQLGLKDTVVFADQLMYTGFAFATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTDKVVNAKGEEIAQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTSHGLTMTPIVEGGDVVEPLRDRVL
GRVVVEDVFLPGNDEDPIVTRNALLDEAWVQKLEDAGVQSIKVRSTITCESAFGVCAQCY
GRDLARGHIVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDSITVKTTGSVK
FNNLKSVEHSNGNLVAVSRSGEISVLDPHGRERERYKLPYGSTITVKDLAAVKAGQSVAN
WDPHNHPIVSEVAGFMRFIDFVDGVTVIEKTDELTGLASREITDPKRRGSMGKDLRPLVR
IVDKDGKDLTLPNTDLPAQYLLPPRSLVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGVVSFGKDTKGKQRLIIRDNEGGEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIADQGDSKFLNGEQVERQRVIEENARLLARKELPARIDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHSKRRRSSTGLTDAE
MSALTGGNEPVAESPAEVVADEGASE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgcccgacctgatccgttcgtggtcgttcggcgaggtgaagaag
cccgagacgatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgccgcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgagaagtgcggcacggaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcatcctgtac
ttcgaagcctacgtggtcaccgagccgggcctgaccccgctcgaccgccgccagctgctg
accgaagagcagttcctgaccgcgcgccaggagcacggtgacgacttcgacgccgcgatg
ggcgccgaggcgatctacgagctgctgcgcacgatcgacctgcaggccgagatggcccgc
ctgcgcgaggaaatcgcggcgaccggttcggagaccaagctcaagcgcctgaccaagcgg
atcaagctggtcgaggcgttcatcgactccggcaaccgcccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtcccgctggacggtggccgcttc
gcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgcttgaactcaatgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgatgcgctgatggacaacggccgccgcggccgcgccatcaccggcaccaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtcggtccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggaactgttcaagccgttc
gtgttcgcaaagttgcagcgtcgcggcctggccaccacgatcaaggccgccaagaagctg
gtcgagcgtgaagaagccgaggtctgggacatcctggaagaggtgatccgcgagcatccg
gtcctgctgaaccgtgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtcccgctgagcctcgaggcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgccctcgagaacaag
aagggcgagggcatggcgttcgcgaacgtggccgaggtcaagcgcgcctacgacaaccgc
gtggtggagctgcatgccaaggtcaaggtccgcatcgtcgaggtagtgaccgacgaggcc
ggcaacaagcagaagtcgacctcgatcgtggacaccacggtcggtcgcgcgctgctggcc
gagatcctgccggagggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactcgtgctaccgccagctgggcctgaaggacaccgtggtgttc
gccgaccagctgatgtacaccggcttcgccttcgcgacccgcgccggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctgaccgaggccgaggccgag
gtgctggagatccaggagcaataccagagcggcctggtcaccgccggcgaacgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacg
atcggcaccgacaaggtggtcaacgcgaagggcgaggaaatcgcccagaagtcgatgaac
tccctgtacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgccagctg
gccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatcaag
gccaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggcctggccgataccgcgctgaagaccgcgaactccggttacctgacccgtcgcctg
gtcgacgtggcccaggacgtggtcatcaccgaggtcgactgcggcacctcgcacggcctg
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgcgcgaccgcgtgctg
ggtcgtgtcgtggtcgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaatgccctgctcgacgaagcgtgggtgcagaagctcgaagatgccggcgtccagtcg
atcaaggtgcgttccaccatcacctgcgaatcggcgttcggcgtgtgcgcgcagtgctac
ggccgcgacctggcccgtggccacatcgtcaacatcggcgaagcggtcggcgtcatcgcc
gcccagtcgatcggcgagccgggcacccagctgaccatgcgtacgttccacatcggtggt
gcggcctcgcgtgcggcggcggtggacagcatcacggtcaagacgaccggttcggtgaag
ttcaacaacctcaagtcggtcgaacacagcaacggcaacctggttgccgtgtcgcgctcg
ggcgaaatctcggtcctcgacccgcacggccgcgagcgtgagcgctacaagctgccttac
ggttcgaccatcaccgtcaaggatctggctgcggtgaaggcgggtcagtcggtcgcgaac
tgggacccgcataaccacccgatcgtgtcggaagtggccggtttcatgcgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactcaccggcctggcgtcgcgc
gagatcaccgatcccaagcgtcgcggctcgatgggcaaggacctgcgtccgctggtccgc
atcgtcgacaaggacggcaaggacctgaccctcccgaacaccgacctgccggcccagtac
ctgctgccgccgcgttcgctggtgaacctgcaggatggcgccgcggtcggcgtgggcgac
gtggtcgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacttgttcgaggcgcgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcgtggtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatccgtgac
aacgagggtggcgagcacgaggagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtatcgagccgctggctgcgtacctggtcaaggaaatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcacccgccagatg
ctgcgcaaggtcgagatcgccgaccagggcgattcgaagttcctcaatggcgagcaggtc
gagcgccagcgcgtcatcgaggagaacgcccgcctgctggcccgcaaggagctgccggcc
aggatcgatccggtcctgctgggcatcaccaaggcgtcgctggcgaccgaatcgttcatc
tccgcggcctccttccaggagaccacgcgcgtgctgaccgaggctgccgttcgcggtacc
cgcgacagcctgcgcggcctgaaggaaaacgtgatcgtcggtcgcctgatcccggccggt
accggcctggcgtatcacagcaagcgtcggcgttcctcgaccggtctcactgacgctgag
atgagtgcgctcaccggcgggaacgagccggtcgccgaatcgccggccgaggtggtcgcc
gacgagggtgccagcgagtaa
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