KEGG   Pseudoxanthomonas daejeonensis: MNQ95_02615
Entry
MNQ95_02615       CDS       T08066                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pdd  Pseudoxanthomonas daejeonensis
Pathway
pdd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pdd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MNQ95_02615 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdd03021]
    MNQ95_02615 (rpoC)
   03400 DNA repair and recombination proteins [BR:pdd03400]
    MNQ95_02615 (rpoC)
Enzymes [BR:pdd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MNQ95_02615 (rpoC)
Transcription machinery [BR:pdd03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MNQ95_02615 (rpoC)
DNA repair and recombination proteins [BR:pdd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MNQ95_02615 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: UNK58026
LinkDB
Position
complement(552161..556381)
AA seq 1406 aa
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSFGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVTEPGLTPLDRRQLLTEEQFLTARQEHGDDFDAAM
GAEAIYELLRTIDLQAEMARLREEIAATGSETKLKRLTKRIKLVEAFIDSGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANVAEVKRAYDNR
VVELHAKVKVRIVEVVTDEAGNKQKSTSIVDTTVGRALLAEILPEGLPFALANTELTKKN
ISRLINSCYRQLGLKDTVVFADQLMYTGFAFATRAGVSIGIDDMLIPDEKKGILTEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTDKVVNAKGEEIAQKSMN
SLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTSHGLTMTPIVEGGDVVEPLRDRVL
GRVVVEDVFLPGNDEDPIVTRNALLDEAWVQKLEDAGVQSIKVRSTITCESAFGVCAQCY
GRDLARGHIVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDSITVKTTGSVK
FNNLKSVEHSNGNLVAVSRSGEISVLDPHGRERERYKLPYGSTITVKDLAAVKAGQSVAN
WDPHNHPIVSEVAGFMRFIDFVDGVTVIEKTDELTGLASREITDPKRRGSMGKDLRPLVR
IVDKDGKDLTLPNTDLPAQYLLPPRSLVNLQDGAAVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAILAERSGVVSFGKDTKGKQRLIIRDNEGGEHEELIPKYRQIIVFE
GEHVTKGETVVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM
LRKVEIADQGDSKFLNGEQVERQRVIEENARLLARKELPARIDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHSKRRRSSTGLTDAE
MSALTGGNEPVAESPAEVVADEGASE
NT seq 4221 nt   +upstreamnt  +downstreamnt
atgaaagacctgctcaatctcttcaaccagcagcgccagacgctggacttcgacgcgatc
aagatcgcgctggcctcgcccgacctgatccgttcgtggtcgttcggcgaggtgaagaag
cccgagacgatcaactaccgtaccttcaagcccgagcgcgacggcctgttctgcgccgcc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgagaagtgcggcacggaagtgaccctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgatgctggacatgaccctgcgtgacatcgagcgcatcctgtac
ttcgaagcctacgtggtcaccgagccgggcctgaccccgctcgaccgccgccagctgctg
accgaagagcagttcctgaccgcgcgccaggagcacggtgacgacttcgacgccgcgatg
ggcgccgaggcgatctacgagctgctgcgcacgatcgacctgcaggccgagatggcccgc
ctgcgcgaggaaatcgcggcgaccggttcggagaccaagctcaagcgcctgaccaagcgg
atcaagctggtcgaggcgttcatcgactccggcaaccgcccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtcccgctggacggtggccgcttc
gcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgc
cgcctgcttgaactcaatgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgatgcgctgatggacaacggccgccgcggccgcgccatcaccggcaccaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctgggcaagcgcgtggactactcgggccgttcggtcatcgtggtcggtccgtac
ctgcgcctgcaccagtgcggcctgccgaagaagatggcgctggaactgttcaagccgttc
gtgttcgcaaagttgcagcgtcgcggcctggccaccacgatcaaggccgccaagaagctg
gtcgagcgtgaagaagccgaggtctgggacatcctggaagaggtgatccgcgagcatccg
gtcctgctgaaccgtgcgccgaccctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgagggcaaggccatccagctgcacccgctggtctgcaccgcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtcccgctgagcctcgaggcccagctggaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgccctcgagaacaag
aagggcgagggcatggcgttcgcgaacgtggccgaggtcaagcgcgcctacgacaaccgc
gtggtggagctgcatgccaaggtcaaggtccgcatcgtcgaggtagtgaccgacgaggcc
ggcaacaagcagaagtcgacctcgatcgtggacaccacggtcggtcgcgcgctgctggcc
gagatcctgccggagggcctgccgttcgcgctggccaacaccgagctgaccaagaagaac
atcagccgcctgatcaactcgtgctaccgccagctgggcctgaaggacaccgtggtgttc
gccgaccagctgatgtacaccggcttcgccttcgcgacccgcgccggcgtgtcgatcggc
atcgacgacatgctgatcccggacgagaagaagggcatcctgaccgaggccgaggccgag
gtgctggagatccaggagcaataccagagcggcctggtcaccgccggcgaacgctacaac
aaggtggtcgacatctggtcgcgcaccaacgagcgcatcgccaaggcgatgatggacacg
atcggcaccgacaaggtggtcaacgcgaagggcgaggaaatcgcccagaagtcgatgaac
tccctgtacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgccagctg
gccggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatcaag
gccaacttccgcgaaggcctgaacgtgcaggagtacttcaactccacccacggtgcccgt
aagggcctggccgataccgcgctgaagaccgcgaactccggttacctgacccgtcgcctg
gtcgacgtggcccaggacgtggtcatcaccgaggtcgactgcggcacctcgcacggcctg
accatgaccccgatcgtggaaggcggcgacgtggtcgagccgctgcgcgaccgcgtgctg
ggtcgtgtcgtggtcgaggacgtgttcctgccgggcaacgacgaggatccgatcgtcacc
cgcaatgccctgctcgacgaagcgtgggtgcagaagctcgaagatgccggcgtccagtcg
atcaaggtgcgttccaccatcacctgcgaatcggcgttcggcgtgtgcgcgcagtgctac
ggccgcgacctggcccgtggccacatcgtcaacatcggcgaagcggtcggcgtcatcgcc
gcccagtcgatcggcgagccgggcacccagctgaccatgcgtacgttccacatcggtggt
gcggcctcgcgtgcggcggcggtggacagcatcacggtcaagacgaccggttcggtgaag
ttcaacaacctcaagtcggtcgaacacagcaacggcaacctggttgccgtgtcgcgctcg
ggcgaaatctcggtcctcgacccgcacggccgcgagcgtgagcgctacaagctgccttac
ggttcgaccatcaccgtcaaggatctggctgcggtgaaggcgggtcagtcggtcgcgaac
tgggacccgcataaccacccgatcgtgtcggaagtggccggtttcatgcgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactcaccggcctggcgtcgcgc
gagatcaccgatcccaagcgtcgcggctcgatgggcaaggacctgcgtccgctggtccgc
atcgtcgacaaggacggcaaggacctgaccctcccgaacaccgacctgccggcccagtac
ctgctgccgccgcgttcgctggtgaacctgcaggatggcgccgcggtcggcgtgggcgac
gtggtcgccaagatcccgcaggaagcgtccaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacttgttcgaggcgcgcaagccgaaggatccggcgatcctggccgagcgt
tcgggcgtggtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatccgtgac
aacgagggtggcgagcacgaggagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtgaccaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgcctgctgggtatcgagccgctggctgcgtacctggtcaaggaaatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcacccgccagatg
ctgcgcaaggtcgagatcgccgaccagggcgattcgaagttcctcaatggcgagcaggtc
gagcgccagcgcgtcatcgaggagaacgcccgcctgctggcccgcaaggagctgccggcc
aggatcgatccggtcctgctgggcatcaccaaggcgtcgctggcgaccgaatcgttcatc
tccgcggcctccttccaggagaccacgcgcgtgctgaccgaggctgccgttcgcggtacc
cgcgacagcctgcgcggcctgaaggaaaacgtgatcgtcggtcgcctgatcccggccggt
accggcctggcgtatcacagcaagcgtcggcgttcctcgaccggtctcactgacgctgag
atgagtgcgctcaccggcgggaacgagccggtcgccgaatcgccggccgaggtggtcgcc
gacgagggtgccagcgagtaa

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