Paracoccus denitrificans: Pden_0002
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Entry
Pden_0002 CDS
T00440
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pde
Paracoccus denitrificans
Pathway
pde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pden_0002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pde03021
]
Pden_0002
03019 Messenger RNA biogenesis [BR:
pde03019
]
Pden_0002
Transcription machinery [BR:
pde03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Pden_0002
Messenger RNA biogenesis [BR:
pde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Pden_0002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
AAA_22
OB_RNB
ATPase_2
AAA_25
AAA
Fungal_virus_P2_C
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ABL68119
UniProt:
A1AXX5
LinkDB
All DBs
Position
1:709..2013
Genome browser
AA seq
434 aa
AA seq
DB search
MRRIVRAHRLDMTEERLNLSDLKAKSPADLLAMAEEWEIENASTMRKGEMMFSILKEHAE
EGFEIGGDGVLEVVQDGFGFLRSPEANYLPGPDDIYVSPDMIRQHSLRTGDTVEGVIRAP
GENERYFALTKVEKINFENPEKARHKVAFDNLTPLYPNERLKMEIEDPTIKDRSARIIDL
VAPIGKGQRSLIVAPPRTGKTVLLQNIAHSIEKNHPECYLIVLLIDERPEEVTDMQRSVK
GEVISSTFDEPASRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKV
LTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIV
LDRKVADKRVFPAMDILKSGTRKEELLVDAKDLQKTYLLRRILNPMGTTDAIEFLISKLK
QTKTNGEFFDSMNA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcggatagtgcgcgcccataggctagacatgaccgaagaacgcctcaacctgtcc
gatctcaaggccaagagcccggccgacctgctggccatggccgaggagtgggaaatcgag
aacgcctcgaccatgcgcaagggcgagatgatgttctcgatcctcaaggagcatgccgag
gaaggcttcgagatcggcggcgacggcgtgctggaggttgtccaggacggtttcggcttc
ctgcgctcgcccgaggcgaactatctgccagggcccgacgacatctatgtcagccccgac
atgatccgccagcacagcctgcgcaccggcgacacggtcgagggcgtgatccgcgccccg
ggcgagaacgaacggtatttcgccctgaccaaggtcgagaagatcaacttcgagaatccc
gagaaagcccgccacaaggtcgccttcgacaacctgacgccgctttatccgaacgaacgc
ctgaagatggagatcgaggatccgaccatcaaggaccgttcggcccggatcatcgacctg
gtggcgccgatcggcaagggccagcgttcgttgatcgtggcgccgccgcgcaccggcaag
acggtgttgctgcagaacatcgcccattcgatcgagaaaaatcacccggaatgctatctg
atcgtgctgctgatcgacgagcggccggaagaggtgaccgatatgcagcgttccgtgaaa
ggcgaggtgatttcctcgaccttcgacgaaccggccagccggcacgtcgccgtgtcggag
atggtgatcgagaaggccaagcgccttgtcgaacataaacgagatgttgtgattcttctg
gattctatcacaagacttggtagagccttcaacaccgtggtgcctagttcgggcaaggtc
ctgaccggcggtgtcgacgcgaatgccttgcagcgtccgaagcgattctttggcgcggcc
cggaatatcgaagagggcggttcgctgaccatcatcgctacggcgctgatcgataccggc
tcgcgtatggatgaggtgatcttcgaggaattcaagggcaccggcaacagcgagatcgtg
ctggatcgcaaggtggccgacaagcgcgtgttcccggccatggatattctcaagtccggc
acccgcaaagaagaattgctggtcgatgccaaggatctgcaaaagacctatctgctgcgg
cgcatcctgaacccgatggggaccacggatgccatcgaattcctgatctcgaagctgaag
cagaccaagaccaatggcgaattcttcgattcgatgaacgcctga
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