Paracoccus denitrificans: Pden_1240
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Entry
Pden_1240 CDS
T00440
Name
(GenBank) Peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
pde
Paracoccus denitrificans
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pde01002
]
Pden_1240
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pde01011
]
Pden_1240
Peptidases and inhibitors [BR:
pde01002
]
Cysteine peptidases
Family C82
Pden_1240
Peptidoglycan biosynthesis and degradation proteins [BR:
pde01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Pden_1240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ABL69345
UniProt:
A1B1F1
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All DBs
Position
1:1202142..1203749
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AA seq
535 aa
AA seq
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MVVAAALAAMPRVAAAQALDVVPVAALPAPRLSFSEQEMQLAQQVADHPGLADFYGTNGL
KPVFTGAAGAARRAALIEALGQAASHGLPPTRYRQAALRTLDREGADTVEEEIRFARAFA
DWSRDVSGGILDPRRVEPGIKREVQRPRTGDLLRAFAAAADPVAMLAALPPQDARYEALR
QALARQSQLVAPGDAPRVAEGLWREGTSDPAVAALRVRLASVGFAAAPMGSPLTYDGALA
QAVAAYQKAAGLPADGVAGPRTVARLNRGTGPEAEAILVALERMRWMRGHDLNARHVWVN
LPEFNARIYENGREVFETRVVIGKANREFETPEFSETMKYMVVNPRWNVPRSITVKEYLP
RLQANRHAVGHLDVVDGAGNVIARDRIDFRKYSAKTFPYRMRQKPSDDNALGQVKFMFPN
PWNIYLHDTPTKHLFNQSSRAYSHGCIRVGRPVDLAHELLKGQVESPEAVFSKALKSGRE
TYLNLRPPVPVHLVYFTAFPDESGQIRRFPDIYGRDALVHAALVKAGLDSAAADE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggttgttgcggccgctctggcggccatgccgcgcgtcgcggcggcgcaggcgctggac
gtggtgccggtcgcggcgcttcctgcgcccaggctaagcttttccgagcaggaaatgcaa
ctggcccagcaggttgccgaccatccgggcctggccgatttctatggcacgaacgggctg
aagccggtctttaccggcgccgcgggggccgcgcgccgcgctgcgctgatcgaggcgctg
gggcaggcggcctcgcacgggttgccgcccacgcgttatcgccaggcggcgttgcgcacc
ctcgaccgcgagggcgccgacacggtcgaggaagagatccgctttgcccgcgccttcgcc
gactggagccgcgacgtgtcgggcgggatcctcgatccgcgccgggtcgaacccggcatc
aagcgcgaggtgcagcgcccgcggaccggcgatctgctgcgcgcctttgccgccgccgcc
gatccggtcgccatgctcgctgcgctgccgccgcaggatgcgcgctatgaggcgctgcgc
caggcgctggcgcggcagtcgcaactggtcgcgcccggcgatgcgccgcgggtggccgag
gggctgtggcgcgaggggaccagcgacccggcggtcgcggcgctgcgcgtgcgccttgcc
tcggtcggtttcgccgcggcgcccatgggcagcccgctgacctatgacggggcgctggcg
caggcggtcgccgcctatcagaaggcggcgggcctgccggcggacggggtggccgggccg
cgcacggtggcgcggctgaaccgcggcaccggccccgaggccgaggcgatcctggttgcg
ctggagcggatgcgctggatgcgcgggcacgacctgaacgcccgccatgtctgggtgaac
ctgcccgagttcaacgcccgcatctacgagaacggccgagaggtcttcgagacccgcgtg
gtcatcggcaaggccaatcgcgaattcgagacgcccgagttcagcgagacgatgaaatac
atggtcgtcaacccgcgctggaacgtgccgcgctcgatcaccgtcaaggaatacctgccg
cggcttcaggccaaccggcatgcggtcgggcatctcgacgtggtggacggggccggcaat
gtcattgcgcgcgaccgcatcgactttcgcaaatacagcgccaagacctttccctatcgc
atgcggcagaaacccagcgacgacaatgcgttggggcaggtcaagttcatgttcccgaac
ccgtggaacatctatctgcacgacacgccgaccaagcatctgttcaaccagtccagccgc
gcctattcgcatggctgcatccgcgtcggccgcccggtcgacctggcgcatgagctgctg
aagggccaggtggaaagccccgaggcggttttctccaaggcgctgaaatccgggcgcgag
acctatctgaacctgcgcccgcccgtgccggtgcatctggtctatttcaccgccttcccc
gacgagagcggccagatccgccgttttcccgacatctatggccgcgatgcgctggtgcac
gcggcgctggtcaaggccgggctggattccgcggccgcggatgaatag
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