Paracoccus denitrificans: Pden_1438
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Entry
Pden_1438 CDS
T00440
Name
(GenBank) pathogenesis-related protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pde
Paracoccus denitrificans
Pathway
pde03420
Nucleotide excision repair
pde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pden_1438
03430 Mismatch repair
Pden_1438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_1438
Enzymes [BR:
pde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pden_1438
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pden_1438
MMR (mismatch excision repair)
Other MMR factors
Pden_1438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
AAA_22
AAA_16
T2SSE
Motif
Other DBs
NCBI-ProteinID:
ABL69539
UniProt:
A1B1Z5
LinkDB
All DBs
Position
1:complement(1407734..1409686)
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AA seq
650 aa
AA seq
DB search
MTDVTDATRDAGADATIRACLSLDQPRSFFLFAGAGSGKTRSLKEALEGLDTQTLTTLRK
HSRKIAVITYTNAAADEITRRVKADPVFQVQTIHSFAWSLIEGRTADIRGWLESNLRTEI
AEIQAAHAKGRAGTDAHDKREKKMASKTKRLERLAEIRAFTYAPEGDNFGRDALQHTEVI
ALAAHFLTESETFQNIVLARYPFILIDESQDTMKPLMEALLTFEARHRGRIALGLLGDTM
QRIYTDGLRDLDQRVGDFSQPAKQMNHRSRKRIVDLANSIRRDDDGRQQRAREDKPGGTV
RVFIAPSDGTDRAVFEASARAEMARITGDSAWQNAEAIKTLTIERHMAAARLGFSELFEP
LSKPDKLKDGFRDGTLPAMRLFTHRVLPLVTAQRNGDAFAAMAVLRDGSPLVDKRGIREG
GGGQATGLDAARAGVAALMTLFNDEPDPSCADVLAVVAEHRLFPIHDQLRACLPDDNLVA
QDMADILAELDPLFDELDLTTPEGTPPAETTITEAWTQALEARFSQVARYLAYVEDRSPY
GTHQGVKGLEFPRVMVIADDAHTRFKGLASYETLFGVKPLGPAAQKKADNGEETTIERTR
RLLYVTCTRAEESLALVLYSEAPDTIRRFLISNGWMAEDEIVIAATDGTH
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
gtgacagacgtgaccgacgccacccgcgacgcgggcgctgacgcgacgattcgcgcgtgc
ctgtcccttgatcagccgcgcagcttctttctctttgccggggcgggatctggaaagacg
cgatctctcaaggaggcacttgagggattggacacacagaccctgaccaccttgcgcaaa
cacagccgcaagatcgccgtcatcacctatactaacgccgccgcagatgagatcacacgc
cgcgtcaaggccgatccggtgtttcaggtacagaccatccacagcttcgcttggtcgctc
attgaggggcgcacggcggatattcggggctggctagagagcaacctgcggacagaaatt
gccgagatccaggcagcccacgcgaagggccgtgcgggcaccgacgcccatgacaaacgc
gagaagaagatggcctccaagacgaagcgtctggagcgcctggctgaaattcgcgccttc
acctatgcacccgagggggacaatttcggccgcgatgcgctgcaacataccgaagtcatt
gcgctcgccgcgcatttcctgactgaaagcgagacgtttcagaacatcgttctggcgcgc
tacccgttcatcctaatcgatgagagtcaggacacgatgaaaccgctgatggaggcgctc
ttgaccttcgaggcgcgccatcgcggccgcatcgccctagggctgctcggggacacgatg
cagcgtatttataccgatggtttgcgcgatcttgaccaacgagtgggggatttttcgcaa
ccggccaaacagatgaaccaccgcagccgcaagcggatcgtggacctggcgaattcgatc
cggcgcgacgatgatggccgccagcagcgggcgcgcgaagacaaaccgggtggcaccgtg
cgtgtctttattgcgccaagcgacggcacagatcgcgcagtcttcgaggcctccgcccgt
gcagaaatggcccgcatcaccggagattccgcgtggcagaacgcggaggcgatcaagacc
ctcacgatcgagcgtcacatggccgccgcacggcttggtttcagtgagttgtttgagccc
ctgagcaaacccgataagctcaaggacgggtttcgagacggcaccttacccgcgatgcgg
cttttcacccaccgggtcttgcctctggtgacggcacaaaggaatggggatgcctttgcc
gcgatggcagtgctgcgcgacggctcaccgctggtcgataagagaggtatccgggagggg
ggcggggggcaggccactggcctcgacgcggcgcgggcgggcgttgcggcgctgatgacg
ctatttaatgacgaaccagatccgagttgtgccgacgtgttggcagtcgtggccgagcac
cggttgttcccgatccatgaccagcttcgggcctgtttgcctgacgacaatctggtggcc
caggacatggccgatatccttgctgagcttgatcccttgtttgacgagctggacctcact
acgcccgagggcacaccacccgctgaaaccaccatcactgaggcctggacgcaggcgctt
gaggcccggttttcccaagtggcgcgctacctcgcctatgtcgaagaccgcagcccctat
ggcacccaccaaggggtcaaggggctcgaatttcctcgggtcatggtgatcgccgacgat
gcacacacgcgcttcaaaggccttgcatcttacgagacgctgtttggtgtgaaaccctta
ggcccagccgcccagaaaaaggcggacaacggcgaggaaaccacgatcgagcgcacgcgc
cgcttgctctacgtcacctgtacccgcgcagaagagagtctcgcgcttgtgctctactcc
gaagcccccgacacgatccgaaggtttctgatctccaacgggtggatggccgaggacgag
atcgtgatagctgcgactgacgggacccattaa
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