Paracoccus denitrificans: Pden_1588
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Entry
Pden_1588 CDS
T00440
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pde
Paracoccus denitrificans
Pathway
pde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pden_1588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_1588
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pden_1588
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Pden_1588
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_16
AAA
TrwB_AAD_bind
DUF87
eIF3_p135
Kinesin
DUF4736
Motif
Other DBs
NCBI-ProteinID:
ABL69688
UniProt:
A1B2E4
LinkDB
All DBs
Position
1:1566388..1568613
Genome browser
AA seq
741 aa
AA seq
DB search
MRQIDPGRNKGETMGHNNTNAPVARFPEVSRPKLEGGKRFVMRSEFQPAGDQPTAIAELS
QGVRAGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILAPNKTLAAQLYGEFKGFFPENA
VEYFVSYYDYYQPEAYVARSDTYIEKESQINEAIDRMRHSATRALLERDDVIIVASVSCI
YGIGSVETYSAMTQDMVVGQLYDQREFLAELVAQQYRRLDAAFQCGGFRVRGDLVEVWPA
HLEDRAWRFDFFGNELESITEFDPLTGAKTDSFKQIRIYANSHYVTPRPTLQQAIKGIRT
ELQTRLKQLADEGKLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTL
FEFIPDNAIVFADESHVSVPQIGGMYRGDFRRKFTLAEHGFRLPSCMDNRPLKFEEWDAM
RPQSVFVSATPAQWELDQTGGVFTEQVIRPTGLLDPQVEIRPVEMQVDDLLDEVRKVAAA
GMRTLVTTLTKRMAEDLTEYLHEQGIRVRYMHSDIDTIERIEILRDLRLGAFDVLVGINL
LREGLDIPECGLVAILDADKEGFLRSETSLIQTIGRAARNADGRVIMYADRITGSMERAM
AETERRRQKQVAYNEAHGITPQTVRKNVEDVLAGLWQGDTDQARITTRVEKPMVGANLAA
HLDALRAQMRKAAENLEFEEAARLRDEVKRLEAVELAIADDPLARQSAIEEAAEAAVKSS
GRSTAGRAGQRGGNKRSRRRG
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcgccagattgacccaggcaggaacaaaggtgaaaccatgggccacaacaacaccaac
gcccccgtcgcgcgctttcccgaggtgagccggcccaagctcgagggcggcaagcgcttc
gtcatgcgttccgagttccagccggcgggcgaccagcccaccgccatcgccgaactgtcg
cagggcgtgcgggcgggcgaacgcgaccaggtgctgctgggcgccaccggcaccggcaag
accttcaccatggccaaggtaatcgagcaaacccagcgcccggcgatcatcctggcgccc
aacaagacgctggccgcgcaattatacggcgagttcaagggcttcttccccgaaaatgcc
gtggaatatttcgtcagctattacgactactaccagcccgaagcctatgtcgcgcgttcc
gacacctatatcgagaaggaatcgcagatcaacgaggccatcgaccggatgcgccactcg
gccacgcgggcgctgctggaacgcgacgacgtgatcatcgtcgcctcggtctcctgcatc
tacggcatcggctcggtcgagacctattcggcgatgacgcaggacatggtggtcggccag
ctctacgaccagcgcgaattcctggcagaactggtggcgcagcaatatcgccgcctcgac
gccgccttccagtgcggtggcttccgcgtgcgaggcgatctggtcgaggtctggccggcc
cacttggaagaccgggcctggcgctttgacttcttcggaaacgaacttgaatcgattacc
gaattcgatccgctgaccggcgccaagaccgacagcttcaagcagatccgcatctatgcc
aacagccactacgtcactccgcggccgactttgcagcaggcaatcaaggggatacggaca
gaacttcagacacggctgaagcaacttgccgacgagggcaagctgctggaggcgcagcgg
cttgaacagcgcacgaacttcgacctggaaatgcttgaagctactggagtttgcaacggg
atcgagaactattcccgctatctgaccggccgggcgcccggcgagccgccgccgacgctg
ttcgagttcatccccgacaatgccatcgtctttgccgacgaatcccatgtcagcgtgccg
cagatcggcggcatgtatcgcggcgacttccggcgcaagttcacgctggccgagcatggc
ttccgcctgcccagctgcatggacaaccggccgctgaaattcgaggaatgggacgcgatg
cgcccgcaatcggtctttgtcagcgccacgcctgcgcaatgggagctggaccagaccggc
ggcgtctttaccgaacaggtcatccgccccacgggcctgctggacccgcaggtcgagatc
cgcccggtcgagatgcaggtggacgacctcttggacgaggtgcgcaaggtcgccgccgcc
ggcatgcgcacgctggtcaccaccctgaccaagcgcatggccgaggacctgaccgaatac
ctgcacgaacagggcatccgcgtgcgctacatgcacagcgacatcgacaccatcgagcgc
atcgagatcctgcgcgacctgcggctgggggccttcgacgttctggtgggcatcaacctg
ctgcgcgaggggctggacatccccgaatgcgggctggtggcgatcctcgatgccgacaag
gagggcttcctgcgctcggaaacatcactgatccagaccatcggccgggcggcgcggaac
gccgacggccgcgtcatcatgtatgccgaccgcatcaccggcagcatggagcgcgccatg
gccgagaccgagcgccggcgccagaagcaggtcgcctataacgaagcgcacggcatcacg
ccgcagaccgtgcgcaagaatgtcgaggacgtgctggccgggctgtggcaaggcgatacc
gatcaggcgcgcatcaccacccgggtcgagaaaccgatggtcggcgccaacctggcggcg
catttggacgcgctgcgggcgcagatgcgcaaggcggccgagaacctggaattcgaggag
gccgcgcggctgcgcgacgaggtgaagcggctggaggcggtcgaactggcgatcgccgac
gacccgctggcccggcaatccgccatcgaggaggcggccgaggcggcggtcaagtcatcg
ggacgctcgaccgcggggcgggccggacagcgcggcggcaacaaacggtcgcgccgccgc
ggctga
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