Paracoccus denitrificans: Pden_1853
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Entry
Pden_1853 CDS
T00440
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pde
Paracoccus denitrificans
Pathway
pde03030
DNA replication
pde03410
Base excision repair
pde03420
Nucleotide excision repair
pde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pden_1853
03410 Base excision repair
Pden_1853
03420 Nucleotide excision repair
Pden_1853
03440 Homologous recombination
Pden_1853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pde03032
]
Pden_1853
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_1853
Enzymes [BR:
pde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pden_1853
DNA replication proteins [BR:
pde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Pden_1853
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Pden_1853
NER (nucleotide excision repair)
GGR (global genome repair) factors
Pden_1853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ABL69950
UniProt:
A1B356
LinkDB
All DBs
Position
1:complement(1852399..1855221)
Genome browser
AA seq
940 aa
AA seq
DB search
MTDGFGKGHHLHLIDGSAFIFRAYHALPPLTRRSDGLPIGAVAGFCNMVWKYLQDGKGSD
QPTHAAVIFDHSARTFRNDIYPLYKANRPEPPEDLRPQFPLTREATRAFNIACIETEGFE
ADDIIASLACQARDAGGRVTIISSDKDLMQLVGGGVEMMDPIKAKPIGPDEVREKFGVGP
ERVVDVQALAGDSIDNVPGAPGIGIKTAAQLIEEYGDLESLLARAAEIKQPKRRQTLIDH
AEQIRISKRLVELDCGMVLDFTLESLEIREPDPEALLEFLTRMELRTLTKRVAERFGTEP
PTMAEVAVPAPAAGADPAMPAAAELPAIDRSLYITIRDEAVLAEWLAEIAEKGVVAIDTE
TTGLDEMQAELVGVSLCTGPGRAAYLPLGHVDGAADLFGSGARVEGQMDLDRALAMLKPV
LEDPSVLKIGQNIKYDWKVLARHGIRMVPLDDTMLLSYAQNAGAHNHGMDELADLYLGHR
CLPIKDLIGSGKSQINFSQVAIDKASEYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLE
RPMIAVLADMEMAGIRIDSEHLKRMSNAFAQKMAGLEAEIHELAGGPFNVGSPKQLGEIL
FERMGLAGGKQGKTGAFSTGAEVLEDLAAEGHELPARVLDWRAISKLKSTYTDALPLHVN
PETGRVHTSYSIAGAQTGRLASTDPNLQNIPVRTDEGRRIREAFVAAPGMRLVSLDYSQI
ELRILAHVAQIPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAINFGVIYGIS
GFGLARNLRIPRAEAQAFIDTYFERFPEIRAYMDRTVAGAKQDGFVRTLFGRRIMTPGIN
QSGPAAGGARRAAINAPIQGAAADIIRRAMIRMPQAIAHLPARMLLQVHDELVFEVEEAA
VPELVEVARGVMQGAADPAVRLDVPLIVDAGQGANWAEAH
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgacggacggattcggcaagggccatcacctgcacctgatcgacggatcggccttcatc
tttcgcgcctatcacgcgctgccgccgctgacccggcgctcggacgggctgccgatcggg
gcggtggccgggttctgcaacatggtgtggaaatacctgcaggacggcaagggatcggac
cagccgacccatgcggcggtgatcttcgaccattcggcgcggacattccgcaacgacatc
tatccgctctacaaggccaaccggcccgagccgccagaggatctgcggccgcaattcccg
ctgacccgcgaggcgacgcgggccttcaacatcgcctgcatcgagaccgagggcttcgag
gccgacgacatcatcgcctcgctggcctgccaggcgcgggatgcgggcgggcgggtcacc
atcatcagttcggacaaggatctgatgcagctggtcgggggcggcgtcgagatgatggac
ccgatcaaggccaagcccatcggtcctgacgaggtgcgcgagaaattcggcgtcggtccc
gagcgggtggtggatgtgcaggccctggccggcgattccatcgacaacgtgccgggcgcg
ccggggatcggcatcaagaccgccgcgcaactcatcgaggaatatggcgatctggaaagc
ctgctggcgcgcgctgccgagatcaagcagcccaagcgccggcagacgctgatcgaccat
gccgagcagatccgcatctcgaagcggctggtcgagctggactgcgggatggtgctggat
ttcaccctggaaagcctggagatccgcgagcccgatcccgaggcgctgctggaattcctg
acccgcatggagctgcgcaccctgaccaagcgagtggccgagcgtttcgggaccgagccg
ccgaccatggccgaggtggctgttcccgcacccgccgccggtgcggacccggcgatgccg
gccgcggccgaactgccggcgatcgaccgcagcctttacatcaccatccgcgacgaggcc
gtgctggccgagtggctggccgagatcgccgagaagggcgtggtcgccatcgacaccgag
accacggggctggacgagatgcaggccgaactggtcggggtttcgctttgcaccggcccg
gggcgggcggcctatctgccgctgggccatgtcgacggggccgccgatctgttcggctcg
ggcgcgcgggtcgaggggcagatggatctggaccgtgcgctggcgatgctgaagccggtg
ctggaggatccgtcggtgctgaagatcggccagaacatcaagtatgactggaaggtgctg
gcccgccacggcatccgcatggtgcctttggacgacaccatgctgctgtcctatgcgcag
aacgccggggcgcacaaccacggcatggacgagctggcggacctgtatctgggccatcgc
tgcctgccgatcaaggatctgatcggctcgggcaagtcgcagatcaatttctcgcaggtg
gccatcgacaaggccagcgaatatgctgccgaggatgccgaggtgacctggcggctgtgg
cgtcacctgcgtccgaaattggcgccgaaccatgtcaccacagcctatgaacggctggag
cggccgatgatcgcggtgctggccgacatggagatggccggcatccgcatcgattccgag
cacctgaagcgcatgtccaacgcctttgcccagaagatggcggggctggaggccgagatc
cacgaactggccggcgggccgttcaacgtcggcagccccaagcagctgggcgagatcctg
ttcgagcgcatggggcttgccggcggcaagcagggcaagaccggagctttttccaccggc
gccgaggtgctggaggatctggccgccgaggggcatgaactgccggcgcgggtgctggac
tggcgggcgatctccaagctgaaatcgacctataccgatgcgctgcccttgcatgtgaac
cccgagaccggccgcgtgcacaccagctattccatcgccggggcgcagaccgggcggctg
gcctcgaccgatccgaacctgcagaacattcccgtgcggaccgacgaagggcggcgcatt
cgcgaagccttcgtcgccgcgccgggaatgcggctggtgagcctggactacagccagatc
gagttgcgcatcctggcgcatgtggcgcagatcccggcgctgcaacaggcctttcgcgac
ggaatcgacatccatgccatgacggcgagccagatgttcggcgtgccggtcgagggcatg
gacccgatgatccgccgtcgcgccaaggcgatcaatttcggggtgatctacggcatctcg
ggctttggcctggcgcgcaacctgcgcattccgcgcgccgaggcgcaggccttcatcgac
acctatttcgagcgcttccccgagatccgcgcctatatggatcgcaccgtggccggggcc
aagcaggacggtttcgtgcgcacgctgttcgggcggcggatcatgacgccgggcatcaac
cagtcggggccggcggccggcggcgcgcgccgcgcggcgatcaacgcgccgatccagggc
gcggcggccgacatcatccgccgggccatgatccgcatgccccaagccatcgcgcatctg
ccggccaggatgctgctgcaggtgcatgacgagctggtcttcgaggtcgaggaggcggcg
gttcccgagctggtcgaggttgcgcgcggcgtcatgcagggcgcggccgatcccgcggtc
cggctggacgtgccgctgatcgtcgatgcggggcagggcgccaactgggccgaggcgcat
tga
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