Paracoccus denitrificans: Pden_1890
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Entry
Pden_1890 CDS
T00440
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pde
Paracoccus denitrificans
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pde03016
]
Pden_1890
Enzymes [BR:
pde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pden_1890
Transfer RNA biogenesis [BR:
pde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pden_1890
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABL69985
UniProt:
A1B391
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All DBs
Position
1:complement(1890087..1891292)
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AA seq
401 aa
AA seq
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MPANALNDRKPEIRTLSTTAELAEFCELAKAEPYVTLDTEFLRERTYYSKLCLIQAALPP
ASATKAAGGLSVLIDPLVEGLSLEPLYDLFRHKPTVKVFHAARQDLEIFFHDAGVMPDPL
FDTQIAAMVCGFGEQVGYETLVKKIARQPLDKSSRFTDWSHRPLSDAQAAYALADVTHLR
AIYEFLSAQLDKTGRAPWLAEEVAVLLNPETYITRPEEAWERVRTRSGSPRFLAVVRELA
RFRETYAQERDIPRARVFKDDALIELASTKPLSEADLAKSRLLLRDARRGEIANGILSAV
KAGVEARDLPKPAPEEPGRPGNAALADLLRVLLKAKADAAGVAPRLIASASDLDAIASGA
RDLPALHGWRAEVFGHDALRLASGEIALSAQGGAVKVVACP
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcaaacgccctgaacgaccgcaagcccgagatccgcaccctgagcaccacggcc
gaactggccgagttctgcgaactggccaaggccgagccctatgtcacgctcgacaccgaa
ttcctgcgcgaacggacctattactccaagctttgcctgatccaggccgccctgccgccg
gcatcggccaccaaggctgcgggcgggctttccgtgctgatcgaccctctggtcgagggg
ttgtcgctagagccgctctacgacctgttccggcacaagccgacggtcaaggtcttccac
gccgcgcggcaggatctggagatctttttccacgacgccggcgtcatgcccgatccgctg
ttcgacacccagatcgccgccatggtctgcggcttcggcgagcaggtcggctatgagacg
ctggtcaagaagatcgcacgccagcccctggacaagtcctcgcgcttcaccgactggtcg
caccggccgctgtcggatgcccaggcggcctatgcgctggcggacgtgacgcatctgcgg
gcgatctacgaattcctttcggcccagctcgacaagaccggacgcgcgccctggcttgcc
gaagaggtcgcggtgctcctgaaccccgaaacctacatcacccgcccggaagaggcgtgg
gagcgggtgcgcacccgctccggttcgccgcgcttcctggccgtggtgcgcgaactggcg
cgcttccgcgagacctatgcgcaagagcgcgacataccccgcgcccgggtgttcaaggac
gatgcgctgatcgagctggcctcgaccaagccgctttccgaggccgatctggccaagtcc
cgcctgctgttgcgcgacgcccgccggggcgagatcgccaatggcatcctttcggccgtc
aaggccggggtcgaggcgcgcgacctgcccaagcccgcccccgaggaaccgggccgtccc
ggcaatgccgcgctggccgatctgctgcgcgtgctgctgaaggccaaggccgatgcggcg
ggcgtggcgccgcggctgatcgcctcggcctccgatctcgacgccatcgcctcgggcgcc
cgcgacctgccggcgctgcatggctggcgggccgaggtcttcggccatgacgcgctgcgg
ctcgcctcgggcgagattgcgctttcagcccagggcggcgcggtcaaggtggtggcctgc
ccctag
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