Paracoccus denitrificans: Pden_2609
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Entry
Pden_2609 CDS
T00440
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pde
Paracoccus denitrificans
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pde03016
]
Pden_2609
Enzymes [BR:
pde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Pden_2609
Transfer RNA biogenesis [BR:
pde03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Pden_2609
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ABL70696
UniProt:
A1B5A2
LinkDB
All DBs
Position
1:complement(2619991..2620605)
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AA seq
204 aa
AA seq
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MTITLYRNDLPDDLDLGPVVAIDTETMGLDPRRDRLCLVQLSSGDGNAHLVQIAKGQREA
PNLARMLADPKVLKLFHFGRFDIAALEAAFGVVTKPVWCTKIASKMVRTYTDRHGLKYLL
SELVGVDISKQQQTSDWGAAELSEAQLEYAASDVLYLHALKAELEKRLAREGRLGLAQAC
FDFLPARAHLDLLGWGDENDIFHH
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcaccctttatcgaaacgacctgccggacgatctggacctggggccggtcgtg
gccatcgacaccgagacgatggggctcgacccgcgccgcgaccggctgtgcctggtgcag
ctgtcctcgggcgacggcaacgcgcacctggtgcagatcgccaagggccagcgcgaggcg
ccgaacctggcgcggatgctggccgatcccaaggtgctcaagctgttccatttcggccgc
ttcgacatcgccgcgctggaggcggccttcggcgtggtgacgaagccggtctggtgcacc
aagatcgcctcgaagatggtgcgcacctataccgaccggcacgggctgaaatacctgctt
tcggaactggtcggcgtcgacatctccaagcagcagcagaccagcgactggggcgcggcc
gagctgtccgaggcgcagctggaatatgccgcgtcggacgtgctttacctgcatgcgctg
aaggccgagctggaaaagcggctggcgcgcgaggggcggctgggtctggcccaggcctgt
ttcgatttccttcccgcccgcgcccatctggatctgctgggctggggggatgaaaacgac
atctttcatcactag
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