Paracoccus denitrificans: Pden_2853
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Entry
Pden_2853 CDS
T00440
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pde
Paracoccus denitrificans
Pathway
pde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pden_2853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pde03019
]
Pden_2853
03016 Transfer RNA biogenesis [BR:
pde03016
]
Pden_2853
Enzymes [BR:
pde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Pden_2853
Messenger RNA biogenesis [BR:
pde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Pden_2853
Transfer RNA biogenesis [BR:
pde03016
]
Prokaryotic type
tRNA degradation factors
Pden_2853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR_2
HTH_Crp_2
MarR
Motif
Other DBs
NCBI-ProteinID:
ABL70937
UniProt:
A1B5Z3
LinkDB
All DBs
Position
2:complement(18955..21219)
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AA seq
754 aa
AA seq
DB search
MAQLPSRQEILDWVSAHPDATAKRDIAKAFGIKGAERIELKRLLKELEAEGLLERRRRHY
HDAERLPPVTVLQLLPPDRDGDIFAKPLEWQGEGPMPRILYAALKSDPAVAPGERILARL
IETRGEDHDYQARLIRRIGTVQHRIVGIFRAATGGAEAGGRILPIDKGQDKEWQVRPGDV
HGAKSGELVEAEQVGPRGRLGLPLARIVERLGDPSAPRAVSLIAIHQHGIPDDFPDEVIA
EADAARPATMKGREDLRHLPFVTIDPSDARDRDDAVAAEMHEDGGATIWVAIADVAHYVR
PGSALDREARNRGNSTYFPDRVVPMLPDILSSDLCSLHQGVDRPVIAVRMRLDAQGDKTG
HSFHRGMIRSAASLAYEQAQAAADGNPDEQTEPLVEPAIRPLWHAYGLLRAARQRRQPLE
LDLPERRIVLTADGRVKSVNFRERYDAHRLIEEFMVLANVAAAEELERLRRPLLYRVHEE
PTVEKLDALREVAEASGFTLAKGQVLQTRHLNRLLEQAEGSEFDELINMTALRSMQQAYY
NPENFGHFGLALRSYAHFTSPIRRYSDLIVHRALVMGHKWGNDGLSAQDIEMLSETAQHI
SETERRSMAAERDTTDRYLAAYLADRVGAEFTGRISGVQKFGAFVRLDETGADGLLPIRE
IGREYFHYDPEAQVLMGSETGLEIGIGQRVTVRLTEAVPLTGGLMLELLELEGRPLPRGS
AGGRGKGPMRKRATQARLAEIKRAQKRRRVRRQR
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctaccctcccggcaagagattctcgactgggtgtccgcccacccggacgcc
accgcgaaacgcgacatcgcgaaagccttcggcatcaagggtgccgaacggatcgagttg
aagcggcttctgaaggagctggaggccgaggggctgctggagcgccgccgccgccattac
cacgacgcagagcgcctgccgccggtcacggtgctgcaattgctgccgcccgaccgagac
ggcgacatctttgccaagcctttggaatggcagggcgaggggccgatgccgcgcatcctt
tacgcggcgctgaaatccgacccggccgtcgcgccgggcgagcgcatcctggcccggctg
atcgagacccggggcgaggatcacgactatcaggcccggctgatccgccgcatcggcacg
gtgcagcaccgcatcgtcggcatctttcgcgccgcgaccggcggggccgaggcggggggc
cgcatcctgcccatcgacaagggccaggacaaggaatggcaggtgcgccccggcgatgtc
catggcgcgaaaagcggcgagctggtcgaggccgaacaggtcggcccgcgcggtcgcctg
ggcctgcccctggcgcggatcgtcgagcggctgggcgatccctcggcacccagggccgtc
agcctgatcgccatccaccagcacggcattcccgacgatttccccgacgaggtgatcgcc
gaggccgatgccgcccgccccgccacgatgaaggggcgcgaggacctgcgccacctgccc
ttcgtcaccatcgatccctcggatgcgcgcgaccgcgacgatgccgtcgccgcagagatg
cacgaggacggcggcgccacgatctgggtcgccatcgccgatgtggcgcattacgttcgc
cccggatcggcgctggatcgcgaggcgcgcaatcgcggcaattccacctatttccccgac
cgggtggtgccgatgctgcccgatatcctgtcgagcgacctgtgctcactgcaccagggc
gtggaccggccggtgatcgccgtgcgcatgcggctggacgcgcagggcgacaagaccggc
cacagctttcatcgcgggatgatccgctcggccgcgagcctggcctatgaacaggcgcag
gcggcggcggacggcaatcccgacgaacagaccgaaccgctggtcgagccggcgatccgg
ccgctctggcacgcctacggcctgctcagggccgcgcgccagcgccgccagccgctggaa
ctggacctgcccgagcgcaggatcgtgctgaccgccgacggaagggtgaaatcggtcaat
ttccgcgaacgctacgacgcgcaccggctgatcgaggaattcatggtgctggccaatgtc
gccgccgccgaggaactggagcgactgcgccggccgctgctctatcgcgtgcacgaggaa
ccgacggtcgaaaagctggacgcgctgcgcgaggtggccgaggcttcgggcttcacgctg
gccaaggggcaggtgttgcagacgcggcacctgaaccggctcctggaacaggccgagggt
tcggaattcgacgagctgatcaacatgactgcgctgcgttcgatgcagcaggcctattac
aaccccgagaatttcggccatttcgggctggcgctgcggtcatatgcgcatttcacctcg
ccgatccggcgctattccgacctgatcgtgcaccgcgcgctggtcatggggcataaatgg
ggcaatgacgggctgtcggcgcaggatatcgagatgctctcggagactgcgcagcatatc
tcggaaaccgagcggcgctcgatggcggcggagcgcgacacgaccgaccgctatcttgcc
gcctatctggccgaccgggtgggggccgagttcaccgggcgcatcagcggcgtgcagaaa
ttcggcgccttcgtgcggctggacgaaaccggggcggacgggcttttgccgattcgcgag
atcgggcgggaatatttccactacgatcccgaggcgcaggtgctgatggggtccgagacg
gggcttgagatcggcatcggccagcgcgtgaccgtgcggttgaccgaggcggtgccgctg
accggcgggctgatgctggaactgctggaactcgagggccggccgctgccgcggggttcg
gccggcgggcgcggcaaggggccgatgcgcaagcgcgcgacccaggcccggctggccgag
atcaagcgcgcgcagaagcgccggcgggttcggcggcaacgctga
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