Paracoccus denitrificans: Pden_3865
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Entry
Pden_3865 CDS
T00440
Name
(GenBank) DNA gyrase, A subunit
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
pde
Paracoccus denitrificans
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pde03032
]
Pden_3865
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_3865
Enzymes [BR:
pde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Pden_3865
DNA replication proteins [BR:
pde03032
]
Prokaryotic type
DNA Topoisomerases
Pden_3865
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Pden_3865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
ABL71931
UniProt:
A1B8T7
LinkDB
All DBs
Position
2:complement(998605..1001346)
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AA seq
913 aa
AA seq
DB search
MADIPENDDDTPENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLK
PVHRRVLFAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPL
LDGQGNFGSMDGDSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPAR
FPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGI
ILGRSGARKAYLEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKE
KRIEGIAHVQDESDRVGVRVVIELKRDATAEVVLNQLFRFTPMQTSFGANMLALNGGRPE
QLTLRDFLTHFLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADA
AEARERLMTRRWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGV
QEVTDELKSLAEAIREFLAILASRERIMGIISDELREVKNLFAVPRRTEITDWAGDLDDE
DLIEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELL
FFTTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIF
STSEGDVRRNALSDFANVMRNGKIAMKLPEGVELIGARMATESDDVMLFTAAGRAIRFQT
TDVRVFKGRDSTGVRGIRLASGDRVVSMSIIRHFEADAGERAAYLKMRRAVEGALDDGAE
ADEDEDNVVEAAISQERYAEMSAAEDLILTITARGAGKISSSHDYPVRGRGGQGVMAMDK
AMRGGPLVASFPVDRDDQIMLATSTGQSIRVPVDGISFRSRSAGGVRVFNTAPGEEVVSV
ARIAENGEDEAEA
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacatccctgaaaacgacgacgatacccccgagaacggcggatcggagcgcgcc
gtgatgcatcacgacggcccggtgatcgacatcgcgcacgagatgcgctcgtcctatctc
gactatgccatgtcggtcatcgtcagccgggcgattcccgacctgcgcgacgggctgaag
ccggtgcatcgccgcgtgctcttcgccatgcacgaaaccggcaacacgcatgacaagccc
tatcgcaagtcggcccgcccggtcggcgacaccatgggtaagtatcacccgcatggcgac
gcctcgatctacgacgcgctggtgcggatggcgcaggacttttccatgtccctgccgctc
ctggacggccagggcaacttcggcagcatggacggcgacagcccggcggccatgcgctat
accgaggtgcggatggacaagccctcggcctatctgctgatggacatcgacaaggacacc
gtcgaattccaggacaactacgacggcaaggaccgcgagccgaccgtattgccggcacgc
ttcccgaacatgctggtcaacggcgccggcggcatcgccgtcggcatggcgaccaacatc
ccgccgcacaacctgggcgaggtggtggacgccacgctggcgctgatcgaggacccggac
ctgccgaccgaacggctgctggagatcgtgcccggcccggatttccccaccggcggcatc
atcctgggccgctcgggggcgcgcaaggcctacctggaagggcgcggcagcatcatcgtg
cgggccaagacccggatcgaggagacccgcgccggccgccaggccatcatcctggacgag
atcccctttcaggtgaacaaggccagcctgatcgagaagatcgccgagctggccaaggaa
aagcgcatcgagggcatcgcccatgtgcaggacgaatccgaccgcgtcggcgtgcgggtg
gtgatcgagctgaaacgcgacgccaccgccgaggtggtgctgaaccagctgttccgcttt
acccccatgcagaccagcttcggcgccaacatgctggcgctgaacggcggccggcccgag
caactgacgctgcgcgacttcctgacccatttcctgactttccgcgaggaagtcgtcgcc
cgccgcaccgcttacgaattgcgcaaggcgcgtgagcgcgcgcatgtgctgtgcggcctc
gccgtggcggtctcgaatgtcgacgaggtagtggcgaccatccgctcctcggcagacgcc
gccgaggcgcgtgagcggctgatgacccggcgctggccggcgcatgagatcgtggaatat
ctgaagctgatcgacgatccgctgcatccggtgaacgaggacggcacctacaacctgtcc
gagacccaggcccgcgccatcctggaactgcgcctgcagcgcctgacccagctgggcgtg
caggaggtcaccgacgagctgaaatcgctggccgaggcgatccgggaattcctggcgatc
cttgcctcgcgcgagcggatcatgggcatcatctcggacgaactgcgcgaggtgaagaac
ctgttcgccgtgccgcgccggaccgaaatcacagactgggccggcgacctggacgacgag
gacctgatcgagcgcgaggacatggtcgtcaccatcacctcgggcggctatatcaagcgc
acggcgctggccgagttccgcgcccagcggcgcggcggcaagggcctgtcgggcatggcc
acgaaagaggacgacgtggtcaccaccctgttcgtcgccaatacccataccgagctcctg
ttcttcaccaccgacggcatggtctaccggctcaagacctggcggctgccgctgggcggg
cgcaccgccaagggcaaggccatcgtcaacatcctgccgatcgggtccggcgtttccatc
gccgcgctgatgccggtcgatgcgccgcaaagcgagtgggacggctaccaggtgatcttc
tcgacctcggagggcgacgtgcgccgcaacgcgctgtccgatttcgccaatgtcatgcgt
aacggcaagatcgccatgaagctgcccgaaggggtcgaactgatcggcgcgcgcatggcg
accgaaagcgacgacgtgatgctgttcaccgccgccggccgtgcgatccgcttccagacc
accgatgtgcgggtgttcaagggtcgcgattcgaccggcgtgcgcggcatccgcctggca
tccggcgaccgcgtggtcagcatgtcgatcatccggcatttcgaggccgatgccggcgag
cgcgccgcctatctgaagatgcgccgcgccgtcgagggcgcactggacgacggcgccgag
gcagacgaggacgaggacaacgtcgtcgaggccgcgatcagccaggagcgctatgccgag
atgtcggcggccgaggatctgatcctgaccatcaccgcgcgcggtgcgggcaagatcagc
tcgtcgcacgactatccggtgcgcggccgcggcggccagggcgtcatggccatggacaag
gcaatgcgcggcgggccgctggtcgccagcttcccggtggatcgcgacgaccagatcatg
ctggccacctcgaccggccagtcgatccgggtgcctgtcgacggcatcagcttccgctcg
cgttccgccggcggcgtgcgcgtcttcaacacggcgccgggcgaagaggtggtttctgtt
gcccgcatcgccgagaatggcgaggatgaggccgaagcctga
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