Paracoccus denitrificans: Pden_4987
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Entry
Pden_4987 CDS
T00440
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
pde
Paracoccus denitrificans
Pathway
pde02020
Two-component system
pde02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Pden_4987
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pden_4987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pde03021
]
Pden_4987
Transcription machinery [BR:
pde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pden_4987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
MarR_2
DUF5789
HTH_3
HTH_IclR
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
ABL73047
UniProt:
A1BC03
LinkDB
All DBs
Position
p1:497659..498849
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AA seq
396 aa
AA seq
DB search
MPQSRRNNRAAGRMRQELTQRQIGKLALSQKMQLSLDVLRMDAGRLSRRIRLELARNPAL
TCADPDLLPQPDDPRAELIAQIGLLPLPADQMRIAQELVHCLDDRGLLADPLAEIAGWLG
TTPAVLEGLLPHLHRLEPHGVFARDMSECFRLQLRAKNLLDPWMDRLLDRLDLVAEGNLS
AIAAFLGTDHEDAGDMIADIRALTPAPLGIPAAGGPPPELELTAQGVLKPGPSLALALGD
EGDGEARAMAQGLVAAVENRMQTLLRIGTALIEIQSSWLLGHGARRPLTMTALGTSLGLS
KSTISRAVAGVVIRTPAGPVHLRDLLKPPISSHNPDLDREGVLQTLSQIIGDWPEGYRCT
DARLAEKLAARGIRLSRRTVAKYRLGLGVPRHRQDE
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
gtgccacagtcgcggcgcaacaaccgggcggcggggcggatgcggcaggaactgacgcaa
aggcagatcgggaaactggcgctcagccagaagatgcagctgtcgctggatgtgctgcgc
atggatgccgggcggctgtcgcgccggatcaggctggaactggcgcgcaaccccgcgctg
acttgcgcggatcccgatctgctgccgcagccggacgatccgcgcgccgagctgatcgcg
cagatcggactgctgcctctgccggcggaccagatgcggatcgcgcaggaactggtccat
tgcctcgacgaccgcggcctgctggccgatccgctggccgagatcgccggctggctgggc
accacgcccgccgtcctcgagggcttgctgccgcatctgcaccggcttgaaccgcacggc
gtctttgcccgcgacatgtccgagtgtttccgcctgcaactgcgggcgaagaacctgctg
gacccatggatggaccggctgctcgaccggctggatctggttgccgaaggcaatctttcg
gcgatcgccgcctttcttggaacggatcacgaggatgcgggggacatgatcgcggatatc
cgcgccctcacgccggcaccgctgggcatcccggctgccggcgggccgccccccgagctg
gaactgacggcgcagggcgtgttgaagcccggcccgtcgcttgcactggcccttggcgac
gagggcgacggcgaagcgcgggccatggcgcagggtctggtcgcggcggtagagaaccgc
atgcagacgctgctgcgcatcggcacggcgctgatcgagatccagtcgtcctggctgctt
ggccacggcgcacggcgtccgctgaccatgaccgcgcttggcacgagtctgggcctcagc
aaaagcaccatcagccgcgcggtcgccggagtggtcatacgaacgcccgccggtcccgtg
catttgcgcgaccttctgaaaccgccgatcagttcgcacaaccccgacctggaccgcgag
ggcgtcctgcagaccctttcccagatcattggcgactggcccgagggataccgctgcacc
gatgcacgccttgccgaaaagcttgcggcgcgaggaatccgcctctcgcgccggacggtc
gccaagtatcggctgggactaggggtgccgaggcacaggcaggacgaatga
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