KEGG   Paracoccus denitrificans: Pden_5114
Entry
Pden_5114         CDS       T00440                                 
Name
(GenBank) DNA polymerase III, epsilon subunit
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
pde  Paracoccus denitrificans
Pathway
pde03030  DNA replication
pde03430  Mismatch repair
pde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pden_5114
   03430 Mismatch repair
    Pden_5114
   03440 Homologous recombination
    Pden_5114
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pde03032]
    Pden_5114
   03400 DNA repair and recombination proteins [BR:pde03400]
    Pden_5114
Enzymes [BR:pde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Pden_5114
DNA replication proteins [BR:pde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Pden_5114
DNA repair and recombination proteins [BR:pde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Pden_5114
SSDB
Motif
Pfam: RNase_T DEDDh_C PAS_9 PAS_4 RNase_H_2 PAS Baculo_PEP_C DUF6237 PAS_10
Other DBs
NCBI-ProteinID: ABL73174
UniProt: A1BCD0
LinkDB
Position
p1:629664..631784
AA seq 706 aa
MRPGLRRLLPVAAPGLALMLWALGGAVLFHASLPAGQGAGLVSALGPALQANGAILFGWW
LAGAALAGWWAARLHARHVEGPARLADAARLLTDNADAPRLEAASPPALAALADAVNRLA
DQRQALRTDMARLVAEAQQKVAQERDQLGALMAELRQSVVVCNLDGRILLYNDHARGLFH
RVSGGQLAGGAEAIGLGRSIHGVIDRALIEHARETVDRHIARGDTAVSAQFVTTTATGSL
LHVVLAPVRSQGGAISGYVLLLDDITQDYAAQSRRDRRLTELTEASRASLANMGAALDML
DYPDLEPAERDGFHAIVRDEVAAMGQRLAAMTADASQEILTRWPLQEMLGDDLLAAAAQH
VLAQTGRVAKVESAEEGLWLRLDSFSLIQALGALAGQLKGPQGMPSLTLRLAPAATPGWA
HLDLVWPLDPAAPAAGGDTGVQSAARDIAERHGGELWLEQDRPAGLSFFRFLLPTAAAGP
EAEALEARPEFYDFDLFAASDSSRSLDDQPLERLSYTVFDTETTGLNPAQGDEIIQIGAL
RILNGKLLRGERFDQLVDPGREIPPESIPYHGIHPEMVQGQPRIAEVLPAFHAYASDTVL
VGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLASIAQPHEPSHSLEAIAARLGVEITQR
HNALSDALVTAEVFLRLLPLLKARGVVTLGQAREAAEHSYYARLRY
NT seq 2121 nt   +upstreamnt  +downstreamnt
atgaggcccggcctgcgccgcctgttgcctgtcgccgcaccggggctggcgctgatgctc
tgggcgcttggcggtgcggtgctgttccatgcctcgctgccggcggggcagggtgccggg
ctggtctcggcgcttggtcccgcgctgcaggccaacggcgcgatcctgttcggctggtgg
ctggccggggcggcgctggcgggctggtgggcggcacggcttcatgcccgccatgtcgag
ggtccggcgcggctggccgatgcggcgcggctgctgaccgacaatgccgatgcgccgcgg
ctggaggcggcttcgcctcctgcgctggccgcgctggccgatgcggtgaaccggctggcc
gatcagcgccaggccctgcgcaccgacatggcccggctggtggccgaggcgcagcagaag
gtggcgcaggaacgcgaccagcttggcgcgctgatggccgagttgcgccaaagcgtcgtg
gtctgcaatctcgacggccgcatcctgctttacaacgaccatgcgcgcggcctgttccat
cgcgtctcgggcgggcagcttgccggcggggccgaggcgatcgggctgggccgctcgatc
cacggcgtgatcgaccgcgccctgatcgaacatgcgcgcgagacggtggaccgccatatc
gcgcggggcgatacggcggtttcggcgcaattcgtcaccaccacggccacgggcagcctg
cttcatgtcgtgctggcgccggtgcggtcgcagggcggcgcgatcagcggctatgtcctg
cttctggacgacatcacccaggattatgccgcccaatcccgtcgcgaccgccgcctgacc
gagctgaccgaggccagccgcgcctcgctggccaatatgggcgcggcgctggacatgctg
gactatcccgacctggagccggccgagcgcgacggcttccatgccatcgtccgcgacgag
gtggcggccatgggccagcggctggcggcgatgacggcggatgcctcgcaagagatcctg
acccgctggcccctgcaagagatgctgggcgacgaccttctggcggccgcggcgcagcat
gtgctggcgcagaccgggcgggtggccaaggtcgaaagcgccgaagaggggctgtggctg
cggctggacagcttttcgctgatccaggcgctgggcgcgctggcggggcagttgaagggg
ccgcagggcatgccgtcgctgaccctgcgcctggcgccggccgcgacgccgggctgggcg
catctggatctggtctggccgcttgatccggccgccccggccgcgggtggcgataccggc
gtgcaaagcgccgcccgcgacatcgccgagcggcatggcggcgaattgtggctggaacag
gaccgcccggccggcctgtccttctttcgcttcctgttgcccaccgcggcggccggaccc
gaggccgaggcgctggaggcgcggccggaattctatgatttcgacctgttcgcggccagc
gattccagtcgctcgctggacgaccagccgctggagcggctgagctataccgtcttcgat
accgagacgaccggcctgaaccccgcgcagggcgacgagatcatccagatcggcgcactg
cgcatcctgaacggcaagctcttgcgcggcgaacgcttcgaccagcttgtcgatcccggc
cgcgagatcccgcccgaatccatcccctatcacggcatccatcccgagatggtgcagggc
cagccccgcatcgccgaggtgctgccggcattccacgcctatgcctcggacacggttctg
gtcggccacaacgtcgccttcgacatgcgcttcctgcaactgaaagaggcggcgaccggg
ctgcgcttcgaccagccggtgctggacacgctgcttctggccagcatcgcccagccgcac
gagccctcgcattcgctggaggccatcgctgcgcggctgggggtcgagatcacccagcgc
cacaacgcgctgagcgatgcgctggtgacggccgaggtgttcttgcgccttctgccgctg
ctcaaggcccgcggcgtcgtcacgttgggccaggcacgcgaggcagccgagcattcctat
tacgcccggctgcggtattag

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