Paracoccus denitrificans: Pden_5114
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Entry
Pden_5114 CDS
T00440
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pde
Paracoccus denitrificans
Pathway
pde03030
DNA replication
pde03430
Mismatch repair
pde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Pden_5114
03430 Mismatch repair
Pden_5114
03440 Homologous recombination
Pden_5114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pde03032
]
Pden_5114
03400 DNA repair and recombination proteins [BR:
pde03400
]
Pden_5114
Enzymes [BR:
pde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Pden_5114
DNA replication proteins [BR:
pde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Pden_5114
DNA repair and recombination proteins [BR:
pde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Pden_5114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
PAS_9
PAS_4
RNase_H_2
PAS
Baculo_PEP_C
DUF6237
PAS_10
Motif
Other DBs
NCBI-ProteinID:
ABL73174
UniProt:
A1BCD0
LinkDB
All DBs
Position
p1:629664..631784
Genome browser
AA seq
706 aa
AA seq
DB search
MRPGLRRLLPVAAPGLALMLWALGGAVLFHASLPAGQGAGLVSALGPALQANGAILFGWW
LAGAALAGWWAARLHARHVEGPARLADAARLLTDNADAPRLEAASPPALAALADAVNRLA
DQRQALRTDMARLVAEAQQKVAQERDQLGALMAELRQSVVVCNLDGRILLYNDHARGLFH
RVSGGQLAGGAEAIGLGRSIHGVIDRALIEHARETVDRHIARGDTAVSAQFVTTTATGSL
LHVVLAPVRSQGGAISGYVLLLDDITQDYAAQSRRDRRLTELTEASRASLANMGAALDML
DYPDLEPAERDGFHAIVRDEVAAMGQRLAAMTADASQEILTRWPLQEMLGDDLLAAAAQH
VLAQTGRVAKVESAEEGLWLRLDSFSLIQALGALAGQLKGPQGMPSLTLRLAPAATPGWA
HLDLVWPLDPAAPAAGGDTGVQSAARDIAERHGGELWLEQDRPAGLSFFRFLLPTAAAGP
EAEALEARPEFYDFDLFAASDSSRSLDDQPLERLSYTVFDTETTGLNPAQGDEIIQIGAL
RILNGKLLRGERFDQLVDPGREIPPESIPYHGIHPEMVQGQPRIAEVLPAFHAYASDTVL
VGHNVAFDMRFLQLKEAATGLRFDQPVLDTLLLASIAQPHEPSHSLEAIAARLGVEITQR
HNALSDALVTAEVFLRLLPLLKARGVVTLGQAREAAEHSYYARLRY
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaggcccggcctgcgccgcctgttgcctgtcgccgcaccggggctggcgctgatgctc
tgggcgcttggcggtgcggtgctgttccatgcctcgctgccggcggggcagggtgccggg
ctggtctcggcgcttggtcccgcgctgcaggccaacggcgcgatcctgttcggctggtgg
ctggccggggcggcgctggcgggctggtgggcggcacggcttcatgcccgccatgtcgag
ggtccggcgcggctggccgatgcggcgcggctgctgaccgacaatgccgatgcgccgcgg
ctggaggcggcttcgcctcctgcgctggccgcgctggccgatgcggtgaaccggctggcc
gatcagcgccaggccctgcgcaccgacatggcccggctggtggccgaggcgcagcagaag
gtggcgcaggaacgcgaccagcttggcgcgctgatggccgagttgcgccaaagcgtcgtg
gtctgcaatctcgacggccgcatcctgctttacaacgaccatgcgcgcggcctgttccat
cgcgtctcgggcgggcagcttgccggcggggccgaggcgatcgggctgggccgctcgatc
cacggcgtgatcgaccgcgccctgatcgaacatgcgcgcgagacggtggaccgccatatc
gcgcggggcgatacggcggtttcggcgcaattcgtcaccaccacggccacgggcagcctg
cttcatgtcgtgctggcgccggtgcggtcgcagggcggcgcgatcagcggctatgtcctg
cttctggacgacatcacccaggattatgccgcccaatcccgtcgcgaccgccgcctgacc
gagctgaccgaggccagccgcgcctcgctggccaatatgggcgcggcgctggacatgctg
gactatcccgacctggagccggccgagcgcgacggcttccatgccatcgtccgcgacgag
gtggcggccatgggccagcggctggcggcgatgacggcggatgcctcgcaagagatcctg
acccgctggcccctgcaagagatgctgggcgacgaccttctggcggccgcggcgcagcat
gtgctggcgcagaccgggcgggtggccaaggtcgaaagcgccgaagaggggctgtggctg
cggctggacagcttttcgctgatccaggcgctgggcgcgctggcggggcagttgaagggg
ccgcagggcatgccgtcgctgaccctgcgcctggcgccggccgcgacgccgggctgggcg
catctggatctggtctggccgcttgatccggccgccccggccgcgggtggcgataccggc
gtgcaaagcgccgcccgcgacatcgccgagcggcatggcggcgaattgtggctggaacag
gaccgcccggccggcctgtccttctttcgcttcctgttgcccaccgcggcggccggaccc
gaggccgaggcgctggaggcgcggccggaattctatgatttcgacctgttcgcggccagc
gattccagtcgctcgctggacgaccagccgctggagcggctgagctataccgtcttcgat
accgagacgaccggcctgaaccccgcgcagggcgacgagatcatccagatcggcgcactg
cgcatcctgaacggcaagctcttgcgcggcgaacgcttcgaccagcttgtcgatcccggc
cgcgagatcccgcccgaatccatcccctatcacggcatccatcccgagatggtgcagggc
cagccccgcatcgccgaggtgctgccggcattccacgcctatgcctcggacacggttctg
gtcggccacaacgtcgccttcgacatgcgcttcctgcaactgaaagaggcggcgaccggg
ctgcgcttcgaccagccggtgctggacacgctgcttctggccagcatcgcccagccgcac
gagccctcgcattcgctggaggccatcgctgcgcggctgggggtcgagatcacccagcgc
cacaacgcgctgagcgatgcgctggtgacggccgaggtgttcttgcgccttctgccgctg
ctcaaggcccgcggcgtcgtcacgttgggccaggcacgcgaggcagccgagcattcctat
tacgcccggctgcggtattag
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