Planococcus dechangensis: H1Q58_04925
Help
Entry
H1Q58_04925 CDS
T07033
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pdec
Planococcus dechangensis
Brite
KEGG Orthology (KO) [BR:
pdec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdec03009
]
H1Q58_04925 (rlmD)
Enzymes [BR:
pdec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H1Q58_04925 (rlmD)
Ribosome biogenesis [BR:
pdec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H1Q58_04925 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
MTS
Methyltransf_11
Cons_hypoth95
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
QMT18362
UniProt:
A0A7D7RXL4
LinkDB
All DBs
Position
complement(1009450..1010814)
Genome browser
AA seq
454 aa
AA seq
DB search
MTEKPIIEMGQKFPLTIKKLGINGEGVGFFKRNVVFVPGALPGEEVTAQVTIVKHNFAQA
RILKIRKSSPHRQTPPCPIFETCGGCQLQHLTYSQQLVEKRDLVLQSLDRYLRGTDIQVR
ETIGMEDPWHYRNKSQFQTRKKDGKVMAGLFAEGSQQLLDIEQCLVQHPDTVKITNAAKR
IIEELNLSIYDGKSMKGLVRTIAVRTAVKTGEIQLVLITTRKDVPKEKVLVERLSAIDPN
LVSIVQNVNAEKTSLVFGETTRTLFGKPTIHEELGELSFDLSARAFFQLNPEQTVKLYDE
IKRAAKLTGKESVVDAYCGVGTIGLWLADSAREIRGMDTIPESVADAKANAKKQGHPATY
VTGTAEKWLETWRKEGYVPDVLTVDPPRTGLADSLLKTILKVKPKRFVYTSCNPSTLAKD
LQQLTKIYRVEYIQPIDMFPQTSQVEAVCLLVLK
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaaaccaatcattgaaatgggacagaaattccctttaaccattaaaaagctc
ggcatcaacggagaaggtgtaggctttttcaagcgcaatgttgtatttgtgcccggtgca
ttacctggcgaagaagtgaccgctcaagtgacaatcgtgaaacacaatttcgcacaagca
cgaatattgaagatccgcaaatcctctccgcaccgccagacgccaccatgcccgattttc
gagacatgcggcggctgccaattgcagcatttgacttacagccaacagcttgtcgaaaaa
cgtgatttggtgctgcaatcactggaccgttatttgcgcggtacggatattcaagtgcgc
gagacaatcggtatggaagatccatggcattaccgcaataaaagccaattccaaacacgc
aagaaagatggcaaagtgatggctggtttgtttgccgaaggctcacaacagctgctcgat
atcgaacaatgtctcgtccagcacccggatacagtaaaaataaccaatgctgcaaaacgc
attatcgaagaattgaacttgtctatttatgatggcaagtcgatgaaagggctcgttcgg
accattgctgtgcgtacggcggttaaaactggtgagatccaactcgtactcatcacaaca
cgcaaagacgtcccgaaagagaaagtactcgtcgaacgcctgagcgcaatcgacccgaac
ttggtgtccatcgttcaaaatgtcaatgccgagaaaacttcgctcgtattcggtgaaaca
acacgtacgttgttcggtaaaccgaccatccatgaagaacttggcgaattgtcgtttgat
ttgtcagcccgcgcgtttttccaattaaacccggaacaaaccgtgaagctctatgatgaa
atcaaacgtgcagcgaaattgaccggcaaagaatccgtcgttgatgcctattgcggcgtg
ggcacgattggcctatggctagcggattccgcacgtgaaatccgcggcatggacaccatt
ccggaaagcgttgccgatgccaaggccaatgcgaaaaaacaaggccatccagcaacttac
gtaacaggaacggctgaaaaatggctcgaaacttggcgcaaagaaggctatgtgccggat
gtcttaacagtcgacccgccgcgcaccgggcttgcagattccctattgaaaaccattttg
aaagtaaaaccaaaacgttttgtctatacgtcctgcaacccgtcgacactcgcaaaagac
ttacaacaattgacaaaaatctaccgagtcgaatacatccagcccatcgatatgttcccg
cagacttctcaagttgaagcagtgtgcttattagtcttgaaataa
DBGET
integrated database retrieval system
