Pseudarthrobacter defluvii: JCQ34_05460
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Entry
JCQ34_05460 CDS
T09165
Name
(GenBank) polysaccharide lyase family 1 protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pdel
Pseudarthrobacter defluvii
Pathway
pdel00040
Pentose and glucuronate interconversions
pdel01100
Metabolic pathways
pdel02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pdel00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
JCQ34_05460
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JCQ34_05460
Enzymes [BR:
pdel01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
JCQ34_05460
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Ortholog
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GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
WJH26351
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Position
1165399..1166784
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AA seq
461 aa
AA seq
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MAAPAPASPAPTGGGVIKADDPAPTGWAAVGRGTDGGAGAPAGSRYEVGTLSELKAVLAN
SGQPTAPKVIYVKGTIDGNQALDGRILGEQDYAAGYDIAKYISCFGPDGKVWSDQTFDYC
KKQRQLRQTGSNNMKRQIEVSIPSNTTVIGLGADSGFVGANIVILSATNVVLRNLSVEAP
VDYFTTWSPDDGNGAWNARFDAVSSVTSDHLWIDHVRLTDGRFPDNEAPLGPNGKPANRH
DGLLDLKDGTDFVTISNSRLSNHDKTMLLGSGDEHVDKDGGKLRVSYIGNYFENLQQRAP
RVRFGQVHVVNNYFTGSTDDPHYPLTSEAQGGSSYFLGAGYESRIFSERNAFELTGPGAD
PSIMVSSYNGHRFSDTGSWFNGKRADLDAIARASFEQHRETALAEAEASGVPAPDWTGWE
FTTDVGWNPADVYDYKAFTTPQAVKNHALQFTGPGVMTVKQ
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
ttggcggctcctgccccggccagccctgccccgacgggaggtggagtcatcaaagccgac
gatccggcacctaccggctgggccgccgtcggacgtgggacagacggcggcgccggcgca
cctgccggaagccgctacgaagtaggcacgctcagtgagctgaaagcggttttggccaat
agcggccagcccactgcacccaaggtcatctacgtcaagggaaccatcgacggaaaccaa
gcactggacggacgcatccttggcgagcaggactacgcagcaggctacgacattgccaag
tacatctcctgtttcggtccggacggcaaggtgtggagcgaccagacctttgactactgc
aagaagcagcggcagttgcggcagaccggaagcaacaacatgaagcgacagatcgaggtc
agcatccccagcaacaccaccgtgatcgggctgggagcggactcaggcttcgtgggcgcc
aatatcgtgatcctaagcgccacgaacgtcgtgctccggaacctgagtgttgaggctccg
gtcgactacttcacgacctggtcacccgacgacggaaacggtgcttggaacgcgcggttc
gatgctgtttcctctgtgacgtccgaccatctctggatcgaccacgtgcgtctgaccgat
ggccgctttccggacaatgaggcgccgctcggccccaacggcaagcctgccaaccgccac
gacggtctgttggacctcaaggacggcacggatttcgtgacgatttccaacagcaggctt
tccaaccatgacaagaccatgctgcttggttccggcgacgaacacgtggacaaggatggc
ggcaagctgcgggtcagctacatcggcaactacttcgaaaacctgcagcaacgtgcgccc
cgcgtccggttcggccaggtgcacgtggtcaacaactacttcacggggagcaccgacgat
ccccactacccgctcaccagcgaagcccagggcgggagcagctacttcctgggagccggc
tacgagtcccggatcttctccgaacgcaatgccttcgaattgaccgggcccggcgccgac
ccgtcgatcatggtcagcagttacaacggccatcgcttcagcgacacgggctcctggttc
aacggcaagcgggcggatctcgatgcgatcgcccgggcctccttcgagcagcaccgggaa
acggcgctagccgaagccgaggccagcggcgtacccgctcccgactggacgggctgggaa
ttcactacggacgtgggctggaacccggcggatgtctacgactacaaagcgttcaccacc
ccgcaggcggtcaagaaccatgccttgcagttcaccgggccgggagtcatgaccgttaag
cagtaa
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