Pseudarthrobacter defluvii: JCQ34_09650
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Entry
JCQ34_09650 CDS
T09165
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
pdel
Pseudarthrobacter defluvii
Brite
KEGG Orthology (KO) [BR:
pdel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdel03019
]
JCQ34_09650
Enzymes [BR:
pdel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JCQ34_09650
Messenger RNA biogenesis [BR:
pdel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JCQ34_09650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
DEXQc_Suv3
MTR4-like_stalk
Helicase_C
nSTAND_NTPase5
AAA_30
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
WJH26266
LinkDB
All DBs
Position
2094300..2097227
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AA seq
975 aa
AA seq
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MSSTTGPFSTGPIDPEELSPAERYRASAERRAEAATPLGSFSGTLDFELDDFQKQACRSL
QEGRGVLVAAPTGAGKTIVGEFAIYLALQRGLKAFYTTPIKALSNQKFSELSEKYGSDNV
GLLTGDTSINGDAQVVVMTTEVLRNMLYADSATLADLGYVVMDEVHYLADRFRGAVWEEV
IIHLPSEVQVASLSATVSNAEEFGAWLDTVRGDTDIIVSEHRPVPLWQHVMVGRQIMDLF
AGETTFDEIAPPVEDEDELPAKPGKPANNAKGRGFDVNPDLLAVAQSETQQSFRSSRPGP
GSRGQRGRRGNDRLGRGGEPRGVRPASRPQVIASLDRMDLLPAITFIFSRAGCEAAVAQC
VGSGLWLTTEREQRIIAQRVDEAGQDIPPDDLDVLGFWTWRDGLVRGFAAHHAGMLPTFK
EVVEKLFADGLVKAVFATETLALGVNMPARSVVLEKLDKFNGEAHVDITAGEYTQLTGRA
GRRGIDIEGHAVVLWQPGTDPTAVAGLASRRTYPLNSSFRPTYNMSINLLAQFGRSRARE
ILESSFAQFQADRSVVGLARQVRSREESLAGYAKSMTCHLGDFTEYARLRRELSDAESAT
SRTKSRVQKSLSGDSLARLLPGDVVNVPGGRAPGPAVVLSSDHGSREPRPAVLTLDNQLR
RIGTDDLEGPIAPVTRIRIPKSFNAKVPKSRRDLASSARNALRENRPPAPGQNRNHDFGR
GAAFPNQEKRIAALRRALKAHPCHGCSEREDHARWSERWWKLRRETDGLVRQIQGRTNTI
AKTFDRVCDVLSAYGYLEETGDGGLKISPDGQRLRRIYGEKDLLISQSLRLGAFDDLDAA
EVAALASVLVFQAKREDRGLRPRMPSVSLETSVDIVVREWSVLEDVEEENKLPLTGEPEL
GLVWPLYKWARGRHLQDVLSGTDLAAGDFVRWVKQVVDLLDQLAKIPGLDPRLARLCAEA
INLIRRGVVAYSSVL
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccaccaccggacccttctccaccggccctatcgatcctgaagagctgtctccc
gctgagcgctaccgtgccagcgccgaacgcagggccgaggcagccacccccctcggatcg
ttcagcgggaccctggactttgaactggatgacttccaaaagcaggcatgccgttccctc
caggagggcaggggagtcctggtggccgccccgaccggtgccggcaagaccatagtgggg
gagtttgccatctacctcgccctgcagcgggggctgaaggccttctacaccacgcccatc
aaggcgctcagcaaccagaagttcagcgaactgagcgaaaagtatggttcggacaacgtt
ggcctcctgaccggtgacaccagcatcaatggcgatgcccaggtggtggtcatgaccacg
gaagtcctgcggaacatgctgtacgcggattcggccacgctggccgatcttggctacgtg
gtgatggatgaggtgcactacctcgccgaccggttccgcggggcagtgtgggaagaagtc
atcatccacctgcccagcgaggtgcaggtcgcctcgctcagcgccacggtctccaacgcg
gaggaattcggcgcctggctggacaccgtccgcggtgacaccgacatcatcgtttccgaa
caccggccggtaccgctgtggcagcatgtcatggtgggccggcagatcatggacctgttc
gccggggaaaccacctttgacgagatcgccccgcccgttgaggacgaggacgagctaccg
gccaagcccggcaaacctgcgaacaacgccaaggggcgcggcttcgacgtcaacccggac
ctgctggccgtggcccagagcgaaacccagcaaagtttccgcagcagccgcccgggcccc
gggagccggggccaacgcggcaggcgcggaaacgaccgcctggggcggggcggagagccc
aggggagtgcggccggccagccgcccccaggtcatcgcgagcctggaccggatggacctc
ctgcctgccatcaccttcatcttttcccgcgccggctgcgaggcagcggtggcccagtgt
gtcgggtccggactgtggctcacaacggaaagggagcagcggatcatcgcccagcgcgtg
gatgaagccgggcaggacatcccgccggacgacctcgacgtcctgggcttctggacctgg
cgggacggcctggtccgcggttttgctgcccaccacgccgggatgctgcccactttcaag
gaggtagtggagaagcttttcgccgacggactggtgaaggctgtcttcgccacggaaacc
cttgccttgggcgtgaacatgcccgcacgttccgtggtgctggaaaagctggacaagttc
aacggcgaagcccacgtggacatcactgcaggtgaatacacccaactgactggccgggcg
ggccgccgcgggatcgacatcgagggccacgccgtggtgttgtggcagcccggaacggac
ccgacggcggtggcaggcctggcgtcccggcgcacctacccgctcaactcgagcttccgg
cccacctacaacatgagcatcaacctcctggcgcagtttggccggtcccgggcccgcgaa
atcctggagtcctcctttgcccagttccaggccgaccgctccgtggtgggcctggccagg
caggtacgcagccgcgaggaatcgctggcaggctacgccaagtccatgacctgccacctg
ggcgactttacggagtatgcccggctgcgcagggaactctccgatgccgagagcgccacg
tcccggaccaagtcacgggtccagaagtcgctcagtggcgactcccttgcccgtctcctg
ccgggggacgtagtgaacgtccccggcggacgcgccccggggcccgccgtcgtcctcagc
tccgaccacggcagccgcgaaccccggcctgccgtgctcacgctggacaaccagttgcgc
cgcattggtacggatgacctggaaggtcccatcgcgccggtgacccggatccgcattccg
aagtccttcaatgccaaggtgcccaagtcacggcgcgatcttgcgtcctccgcccggaac
gcgctgcgggagaaccggccgcccgctcccggccagaaccgcaaccacgattttggccgc
ggcgcagcctttcccaaccaggagaagcgtattgccgccctgcgccgggccctgaaggcg
cacccctgccatggatgcagcgaacgggaagaccacgcccggtggtcggagcgctggtgg
aagctgcggcgcgaaacggacgggctggtccgccagatccagggccggaccaacaccatc
gccaaaaccttcgaccgggtctgcgatgtcctgtccgcctacggatatttggaggagacc
ggggacggcgggctcaagatcagcccggatggccagcggctgcgccggatctacggcgag
aaggacctgctgatctcgcagtccctgcgcctgggcgccttcgatgacctggacgccgcc
gaagtggccgccctggccagcgtcctggtattccaggccaaacgcgaagaccggggactg
cggccgcgcatgcccagcgtctccctggaaacttcggtggacatcgtggtgagggagtgg
tccgtgcttgaggacgtggaagaggagaacaagcttccgctgaccggcgagcctgaactg
ggcctggtctggcccctctacaagtgggcccgcggccgccacctgcaggatgtcctgagc
ggcaccgacctcgcggccggcgactttgtccgctgggtcaagcaggtggtggacctcctg
gaccagctggcaaagatccccggccttgatccgcggctggcacggctttgcgccgaggcg
atcaacctcatccgccgcggcgtcgttgcgtactcgtccgtcctctaa
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