Pseudarthrobacter defluvii: JCQ34_11915
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Entry
JCQ34_11915 CDS
T09165
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pdel
Pseudarthrobacter defluvii
Brite
KEGG Orthology (KO) [BR:
pdel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdel03019
]
JCQ34_11915 (hrpA)
Enzymes [BR:
pdel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JCQ34_11915 (hrpA)
Messenger RNA biogenesis [BR:
pdel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JCQ34_11915 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
AAA_23
HA2_N
nSTAND3
PhoH
SRP54
Motif
Other DBs
NCBI-ProteinID:
WJH23191
LinkDB
All DBs
Position
2576098..2580078
Genome browser
AA seq
1326 aa
AA seq
DB search
MTFHISYPAELPVSERREDLMAAIAANQVTIIAGETGSGKTTQIPKMCLELGLGEKGLIG
HTQPRRLAARTVAERIAEELGVEIGQEIGFQVRFTGEVSKATKVKLMTDGILLAEIQRDR
LLRKYSTIIIDEAHERSLNIDFILGYLKRILPQRPDLKVIITSATIDPERFANHFGTSAN
PAPIIEVSGRTYPVEIRYRPLTQPAADDEDASDDELEEARDPLDAVCDAVDELATEAPGD
ILVFFSGEREIRDAAEALQARIQSNRRLANTEILPLFARLSLQEQHKVFHPGTKRRIVLA
TNVAETSLTVPGIKYVVDTGTARISRYSHRTKVQRLPIERVSQASANQRSGRCGRVSDGI
AIRLYSEEDFESRPRFTDPEILRTNLAAVILQMTAMGVAKGPKDVEEFPFVEPPETRAIN
DGVTLLRELGALAPPRPQGKGGRTEAAEDRGGQKGGGLTAVGQKLAQLPVDPRLGRMIVE
AGKRGCVREVMVLAAALTIQDPRERPTDKQQLAAEKHNRFRDENSDFTGYLNLWNYLQEK
QQELSSSAFRRLCRAEFINYLRVREWQDLFTQLRQLARPLGITLDNKRLADPVGNHDGIH
ISLLSGLLSHIGILDERKREYAGARGSRFAIFPGSSLFKKSPTFVMAAELVETSRLWARV
AAKFDPLWAEQVAPDLVKRSYSEPHWSTKQGAVMAYEKVTLYGVPIIAQRRINYGRVDPV
VARELFIRHALVEGDWRTHHKFFHRNRALLHEVEELEARMRRRDLLVDDETLFEFYDARI
GPDVVSERHFDKWWKDARREHPDLLDYDKSLLLSDDADDLDESAYPKTWLHKGFELPLTY
EFHPVAPGSAPDPSDGVTAEVPVLFLNQLDDAPFRWLIPGQRVELVTALIKSLPKQVRKN
FVPAPDVARQAVALLESDFDPARDELEPSLELALRRIRGAIIPPGSWNWDAVPPHLRVSF
KVVDSKGKVLGEGKDLAELQERLAPATRRAIAESLGATPASAAAGTSKRRNGKVSDGGPA
ARQQPAGVPGAAAGAGFVEQDGLTEWVVGTIERQVSSMVKGHTVTGYPALVDQGTAVSLR
VFQTAEEQLEAMRGGVIRLLALRVPAPDRYVLEHLSNTEKLTFSQNPHGSVSALIADCAL
AAIDKLTPAELPWDRKAFDALYEVVRAELIDTVFSVTAVVERILSSTRRIEKQLKGTTSL
ALISALNDIKSQLEQLVYPGFVARTGYAQLSQLPRYLAAIEKRLERLPGNVQRDALNMAV
VQRLEDDYDDAVSALLPGRGAGRELTQVRWMIEELRVSLFAVELGTAYSVSEKRIRTVLN
KALAPA
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgacttttcatatctcctatcccgccgagctgccggtttccgagcgccgcgaggacctg
atggccgccatcgccgccaaccaggtgaccatcatcgccggcgagaccggctccggaaag
accacccagatccccaagatgtgcctggaactgggcctgggcgaaaagggccttatcggg
cacacccagccccggcggctggccgcccggacggtggccgagcgcatcgcggaggagctc
ggcgtcgagatcggccaggagatcggcttccaggtccggttcacgggcgaggtcagcaag
gcgaccaaggtcaaactgatgaccgacggcatcctgctcgccgagatccagcgggacagg
ctgctgcgcaagtacagcaccatcatcattgacgaagcgcacgaacgcagcctcaacatc
gacttcatcctgggctacctcaagcggatcctgccgcagcggccggacctgaaagtcatc
atcacctcggccaccatcgatccggaacggttcgccaaccacttcggcacctccgcaaat
ccggcacccatcatcgaagtctccggccggacctaccccgtggaaatccgctaccgcccc
ctcacgcagccggccgcggacgatgaggacgcctcggacgatgaactcgaagaggcccgc
gaccccctggatgccgtttgcgacgccgtggacgagctggcaaccgaagcgcccggggac
atcctggttttcttctcgggcgagcgcgaaatccgcgacgccgcggaagcgttgcaggcc
cgcatccagtccaaccgccggctggccaacaccgagatcctccccttgttcgcccggctg
agcctgcaggagcagcacaaggtgttccaccccggtactaagcgcaggatcgtgctggcc
accaacgtggcggaaacctccctaactgtgccgggcatcaagtacgtcgtcgataccggt
acggcgcgcatctcgcggtattcgcaccgcaccaaggtccagcgcctgcccattgaacgc
gtctcccaggcatcggccaaccagcgctcaggccgctgcggccgcgtgtccgacggcatc
gccatccggctgtattcggaggaggacttcgagtcccggccccggttcacggatccggaa
atcctgcgcaccaacctcgccgccgtcatcctccagatgacggcgatgggcgtggcgaaa
ggccccaaggacgtcgaggaattccccttcgtcgaaccgccggaaacccgcgccatcaac
gacggcgtcaccctccttcgcgagctgggcgccctggctccgccacgcccgcagggcaaa
ggcggcaggactgaagcagccgaggaccggggcggacaaaagggtgggggcctcaccgcc
gtcggacagaaactcgcccagctgcccgtggatccccgcctgggccggatgatcgtggaa
gccgggaaacgtggctgcgtccgggaagtgatggtcctggctgccgcgctcaccatccag
gacccgcgcgaacggcccacggacaagcaacagctggccgcggaaaagcacaaccgcttc
cgcgatgagaattcagacttcaccggctacctcaacctctggaactacctgcaggagaag
cagcaggaactgtcgtcgtcagccttccgcaggttgtgccgcgccgaattcatcaactac
ctgcgcgtgcgggagtggcaggacctctttacccaactgcgccagctcgcccggccgctg
ggcatcacgctggacaacaagaggctggccgatcccgtgggcaaccatgacggcatccat
atcagcctgctctccgggctcctgagccatatcggcatcctggatgaacgcaagcgcgaa
tacgccggcgcccggggcagccggttcgccatcttcccgggttcctcgctgttcaagaaa
tcccccacgttcgtcatggccgcggagctggtggaaaccagcaggctctgggcccgggtg
gccgcaaagttcgatcccctgtgggccgaacaggtggctccggacctggtcaagcgcagc
tacagcgaaccgcactggtccaccaaacagggcgccgtgatggcctacgaaaaggtcacc
ctttacggcgtgccgatcatcgcgcagcggcgcatcaattacggccgggtggatccggtg
gtggccagggaactgttcatccggcatgccctggtggaaggcgactggcgcacccaccac
aagttcttccaccgcaaccgggccctcctgcacgaggtggaggaactcgaggcccgcatg
cgccgccgcgacctgctggtggatgacgagacgctgttcgagttctatgacgccaggatc
ggacccgatgtggtctccgagcgccacttcgacaagtggtggaaggatgcccgcagggag
cacccggacctcctggattacgacaaatcgctgctcctgagcgacgacgccgacgacctg
gacgagtccgcgtacccgaaaacctggctgcacaagggtttcgagctcccgctgacgtat
gaattccatcccgtggcgccgggctccgcccccgacccgtccgacggtgtcaccgccgaa
gtgccggtgctgttcctgaaccaactcgacgacgcgccgttccggtggctgattccgggc
cagcgggtagagctggtgaccgccctgatcaagtcgctgcccaaacaggtccggaagaac
ttcgttcccgcccccgatgtcgcccggcaggcggtggccctcctcgaatcagactttgat
ccggccagggacgagctggaaccgtcgctggaacttgcgctgcggcggatccgcggcgcc
atcatcccgcccggctcctggaactgggacgccgtgcccccgcacctgcgggtgagtttc
aaagtggtggacagcaagggcaaagtcctgggcgaaggcaaggaccttgcggaactgcag
gagcggcttgcccccgccacccgccgggccatcgccgaatcgctcggcgccaccccggcc
tccgcagctgccggcacgtccaagcggcgcaacggcaaggtgtccgacggcgggccggcc
gcacgccagcagcccgccggggtgccgggagccgctgccggggccggattcgtggagcag
gatggtctgacggagtgggttgtcggcaccatcgagcgccaggtgagcagcatggtcaag
ggccacactgtcaccggttatccggcgctggtggaccagggcaccgcggtgtcactgcgc
gtgttccaaaccgccgaggaacagctcgaagcgatgcggggcggggtgatccggctcctg
gcgctgcgcgttccggcccctgaccggtacgtcctggagcacctgagcaacaccgagaag
ctcaccttcagccagaacccgcatggttcggtgtccgccctcatcgcagactgcgcgctg
gcggccatcgacaagctcacgcccgcggaacttccctgggaccgcaaagcgttcgatgcg
ttgtatgaggtggtgcgcgccgagctcatcgacacggtcttttcggtcactgccgtcgtc
gagcgcatcctgtccagtacccggcggatcgagaagcaactcaagggcaccaccagcctg
gccctgatcagcgcactgaacgacatcaaaagccaactggagcagctggtgtatcccggc
tttgtagcacggacgggctacgcccagttgagccagctgccgcgctacctggccgcgatc
gagaagcggctggagcgcctccccggaaacgtgcagcgggatgccttgaacatggcggtg
gtacagcggcttgaggatgattacgacgacgccgtgtcggcgttgctgccggggcggggt
gccggacgggagttaacccaggtgcgctggatgatcgaggaacttcgggtgagcctgttt
gccgtcgaactcggcacggcctattccgtttccgagaaacgtatccgcaccgtactcaac
aaggccctggcacccgcctag
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