Pseudarthrobacter defluvii: JCQ34_13600
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Entry
JCQ34_13600 CDS
T09165
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdel
Pseudarthrobacter defluvii
Pathway
pdel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JCQ34_13600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdel03021
]
JCQ34_13600
03400 DNA repair and recombination proteins [BR:
pdel03400
]
JCQ34_13600
Enzymes [BR:
pdel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JCQ34_13600
Transcription machinery [BR:
pdel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JCQ34_13600
DNA repair and recombination proteins [BR:
pdel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JCQ34_13600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
DUF4407
Motif
Other DBs
NCBI-ProteinID:
WJH23492
LinkDB
All DBs
Position
complement(2942053..2945952)
Genome browser
AA seq
1299 aa
AA seq
DB search
MSSESSFGLMQIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEAARHEELPNLQVEHDIEKKQLIDNRDADIAAIARDLEGE
IARLEGEGAKAADKKKARDSADRQMANVRKRADADIERLEQVWDRFKNLKVADLEGDEGL
YRELRDRYGMYFEGSMGAEAIKKRLENFDMQAESEALRDVIANGKGQRKTRALKRLKVVN
AFLTTNNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLYHLTTKRKGSAGEGR
VFGSVSEAIMAFDARELHLNSQVKIRLEGFVPYAGWEAPEGWEQGQPALVETSLGQVIFN
ETLPEDYPWVEAVADKGELSRIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DIEVPAAKPEILAGYEERAAKIQGQYDKGLIDDDERRQELIEIWNKATNDIASVMRESLS
PMNTINRMVSSGARGNWMQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREEDCGTERGLVTPIAVADSNGELVLDE
NVENSAYARTLAVDVVDSEGNVLAAAGTDCGDVVIDELFKAGITEVKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAVSAGGGDDITQGLP
RIQELFEARTPKGVAPIAEAAGRITIEESERQMRLVITPDDGSEEIAYPVLRRSRLLIED
GDHVSVGQKLINGPVDPKQVLRIMGPRAAQKFLVDEVQGVYRSQGIGIHDKHVEVIVRQM
LRRVTVIESGESDLLPGELAERSRFEEANRRVVSEGKTPASGRPELMGITKASLATESWL
SAASFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLPRYTEVTVEPTEEAKAN
LFTGPSAFSDFSYDTLGGDGAPEFHAIPLDDYDLGNDFR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcagatcggcctcgccaccgcggaagacatc
cgcggctggtcgtacggcgaggttaagaagccggaaaccatcaactaccgcacgcttaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccgtcccgcgactgggaatgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaagtcacccgcgccaaggtccgccgtgagcgcatgggccacattgaactggccgccccg
gtcacgcacatctggtacttcaagggtgttccgtcccgcctgggctacctccttgacctg
gctccgaaggacctcgaaaaggtcatctatttcgctgcctacatgatcaccagcgttgac
gaggccgcccgccacgaggaactgcccaacctgcaggttgagcacgacatcgagaagaag
cagctgatcgacaaccgcgacgccgatatcgccgcgatcgcccgcgacctcgaaggcgaa
atcgcccgccttgagggcgaaggcgccaaggctgcggacaagaagaaggcccgcgactcc
gccgaccgccagatggccaacgtccgcaagcgtgccgacgccgacatcgaacgcctcgag
caggtctgggaccgcttcaagaacctgaaggtcgccgaccttgaaggtgacgaaggcctg
taccgcgaactgcgcgaccgctacggcatgtacttcgaaggctccatgggtgccgaagcc
atcaagaagcgccttgagaacttcgacatgcaggccgagtccgaggcactgcgcgacgtc
atcgccaacggcaagggccagcgcaagacccgtgccctcaagcgcctgaaggtggtcaat
gcattcctgaccaccaacaacagcccgcttggcatggtcctcgacgccgtcccggtgatc
ccgccggaactgcgccccatggtccagctggacggtggccgctttgcgacctcggacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgcctgcttgacctg
ggtgctccggagatcatcgtcaacaacgagaagcgcatgcttcaggaagctgttgacagc
ctcttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgtccgctgaag
tccctgagcgacatgctcaagggcaagcagggccgtttccgccagaacctcctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggccctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcccagaacatcaagtccgccaagcggatggtggagcgctaccgc
ccccaggtctgggacgtgctcgaagagatcatcaccgaacacccggtgctgctcaaccgt
gcacctaccctgcaccgcctgggcatccaggcgttcgagccgcagcttgttgaaggcaag
gcaatccagctgcacccgctggtttgtggcgcgttcaacgccgacttcgacggcgaccag
atggcagtccacctgccgctgagccccgaggcgcaggctgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccctctgacggacgcccggtcaccctgccttcgcaggat
atgatcatcggcctgtaccacctgaccaccaagcgcaagggttcagctggtgaaggccgc
gtgttcggttcggtctcggaagccatcatggccttcgacgcccgcgagctgcacctgaac
tcgcaggtcaagatccgccttgaaggcttcgtcccgtacgccggctgggaagctcccgaa
ggctgggagcagggtcagcccgcactggttgaaacctccctgggccaggtcatcttcaac
gagaccctgcccgaggactacccgtgggttgaggctgttgccgacaagggcgaactgtcc
cgcatcgtcaacgacctcgccgagcgctacccgaaggttgtcaccgctgcaacgctggac
aacctgaaggatgccggtttctactgggccacccgttcaggcgtcaccgttgccatctcc
gacatcgaggttcctgctgccaagccggaaatccttgccgggtacgaagagcgcgccgcc
aagatccagggccagtacgacaagggcctgatcgatgacgacgagcgccgccaggagctc
atcgagatctggaacaaggccaccaacgacatcgcctcggtgatgcgtgagagcctgtcc
ccgatgaacaccatcaaccgcatggtgtcctccggtgcacgtggtaactggatgcaggtc
cgccagattgcgggtatccgtggcctggtggccaacccgaagggtgagatcatcccgcgc
cccatcaagtcctcctaccgtgagggcctgtcggtgctggaatacttcatcgccacgcac
ggtgcccgtaagggcctcgccgataccgctctgcgtaccgccaactccggttacctgacc
cgtcgtctggtggacgtctcgcaggacgtcatcgtccgtgaagaggactgcggcaccgag
cgcggcctggtcacgcccatcgccgtcgccgactccaacggtgagctggtcctggacgag
aacgtcgagaacagcgcttacgcacgtacgctggctgtcgacgtcgtggactccgagggc
aacgtcctcgcagccgccggcaccgactgcggcgacgtggttatcgacgagctcttcaag
gcaggcatcaccgaggtcaaggtccgctccgtactcacctgtgagtccagcgtcggcacc
tgcgccctgtgctacggccgctcgctggccaccggcaagaccgtggacatcggcgaggcc
gtgggcatcatcgccgcacagtccatcggtgagcccggtacccagctgaccatgcgtacg
ttccacaccggtggtgctgtttccgccggtggtggcgacgacatcacccagggtctgccc
cgtatccaggagctcttcgaagcccgcactccgaagggtgttgcaccgattgctgaagca
gccggccgcatcaccatcgaagagtccgagcgccagatgcgcctggtcatcaccccggat
gacggctcggaagagatcgcctacccggtgctgcgccgttcacggctgctgatcgaagac
ggcgaccacgtctccgtcggccagaagctgatcaacggccctgtggaccccaagcaggtc
ctgcgcatcatgggtccgcgtgcggcgcagaagttcctggtggacgaagtccagggcgtg
taccgcagccagggcatcggtatccacgacaagcacgtcgaggttatcgtccgccagatg
ctgcgccgcgtcacggtcatcgagtccggcgaatccgacctgctgcccggcgagctcgcc
gagcgcagccggttcgaggaagccaaccgccgtgttgtgtccgagggcaagactccggct
tccgggcgtcctgaactcatgggcatcaccaaggcgtcgctcgccaccgagtcctggctg
tccgcagcttccttccaggagaccacccgcgtcctgacgcaggcggccatggaaggcaag
agcgatccgctgctgggcctcaaggagaacgtcatcatcggtaagctgatcccggccggc
acgggcctcccgcgctacaccgaggtcaccgtcgagcccactgaagaagcaaaggccaac
ctgttcaccggccccagcgctttcagtgacttctcgtacgacaccctgggcggtgacgga
gctcccgagttccacgccatccccctggatgactacgacctgggcaacgacttccggtaa
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integrated database retrieval system
