Pseudomonas denitrificans (nom. rej.): F1C79_00800
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Entry
F1C79_00800 CDS
T09478
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03410
Base excision repair
pden03430
Mismatch repair
pden03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F1C79_00800 (recJ)
03430 Mismatch repair
F1C79_00800 (recJ)
03440 Homologous recombination
F1C79_00800 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pden03400
]
F1C79_00800 (recJ)
DNA repair and recombination proteins [BR:
pden03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
F1C79_00800 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
F1C79_00800 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F1C79_00800 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QEY70314
UniProt:
A0A9X7R2I5
LinkDB
All DBs
Position
153788..155503
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AA seq
571 aa
AA seq
DB search
MRIESRPLPPTLPNLGDLPPLLTRLYAARGVQSAAELDKGLARLIPYQQLKGVDAAVELL
VDALEKGQRILYVGDFDADGATASSVGVLALRMLGAAWVDYLVPNRFEYGYGLTPEIVAV
ALEKRPELLVTVDNGISSIDGVAAAKAAGLRVLVTDHHLPGAELPAADAIVNPNQPGCDF
PSKAMAGVGVIFYVMLALRARLRERGWFAARGIAEPNLAELLDLVSLGSVADVVPLDANN
RILVHQGLARIRAGRARPGLRALLEVAGRDCRRITSTDLGFILGPRLNAAGRLDDMSLGI
ELLLCEDESVARDMAVQLDQLNQDRKAIEQGMQREALAQLKELPVEEMPFGLCLFDPEWH
QGVIGILASRLKERYHRPTIAFADAGDGTLKGSARSVPGFHIRDALDAVAARHSGLISKF
GGHAMAAGLSLPQENFGAFAAAFDAEVRRQLDEEDLTGRLLSDGQLGAEEFHLELARALR
QAGPWGQHFPEPLFHGIFQIVQQRVVGERHLKLVLKTECGSLQLDAIAFNIDREIWPNPT
VRWAEVAYKLDVNEFRGNETVQLMVAHIAPR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgaatcccgccccctcccgccaaccctgcccaacctgggcgacctgccgccg
ctgctgacccgtctctacgccgcccgtggcgtgcagagcgccgccgagctggacaagggg
ctggcgcggctgatcccgtaccagcagctcaagggtgtggacgcggcggtggaactgctg
gtcgatgcgctggaaaagggccagcggattctctatgtcggcgacttcgacgccgacggc
gccaccgccagcagcgtcggcgtgctggcgctgcgcatgctcggcgcggcctgggtcgat
tacctggtgcccaaccgcttcgagtacggctacggcctgaccccggagatcgtcgcggtg
gcgctggagaagcgcccggaactgctggtcaccgtggacaacggcatctccagcatcgac
ggcgtcgccgctgccaaggccgccggcctgcgcgtactggtcaccgaccaccacctgccg
ggggcggaactgcccgccgccgacgccatcgtcaacccgaaccagcccggctgcgacttc
cccagcaaggccatggccggtgtcggcgtcatcttttacgtaatgctcgccctgcgcgcg
cgcctgcgtgagcgcggctggttcgccgcgcgcggcatcgccgagccgaacctcgccgag
ctgctcgacctggtgtccctaggcagcgttgccgacgtagtgccgctggacgccaacaac
cgcatcctggtgcaccagggcctcgcgcgcatccgcgccggccgcgcccgtccgggcctg
cgtgcgctgctggaagtggccggacgcgattgccggcgaatcacctccaccgacctgggc
ttcattctcggcccgcgcctgaacgccgccggccgcctggacgacatgtccctggggatc
gagctgctgctctgcgaagacgaaagcgtcgcccgcgacatggcggtgcagctcgaccag
ctcaaccaggaccgcaaggccatcgagcagggcatgcagcgcgaggcgctggcgcagctc
aaggaactgccggtggaggagatgccctttggcctctgcctgttcgacccggagtggcac
cagggcgtgatcggcattctcgcttcgcgcctgaaggagcgttaccaccgtccgaccatc
gcctttgccgatgccggcgacggcacgctcaagggctcggcgcgatcggtgccgggcttc
catatccgcgacgcgctggacgccgtggctgctcgtcattcggggttgatcagcaagttc
ggtggccacgccatggccgccggcctgtcgttgccgcaggaaaacttcggtgccttcgcc
gccgctttcgacgccgaggtgcgccgccagctggatgaagaagacctcaccggccgcctg
ctctccgacggccagctgggcgccgaggagttccacctggaactggcccgcgccctgcgc
caggccgggccctggggccagcatttccccgagccgctgttccacggcatcttccagatc
gtccagcagcgcgtggttggcgagcgtcacctgaagctggtgctcaagaccgaatgcggc
tcgctgcagctggacgccatcgccttcaacatcgaccgcgaaatctggccgaaccccacc
gtgcgctgggcggaagtggcctacaagctggacgtcaacgaattccgcggcaacgaaacg
gtgcagttgatggtggcgcatatcgcgccgcgctga
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