Pseudomonas denitrificans (nom. rej.): F1C79_02935
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Entry
F1C79_02935 CDS
T09478
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden00300
Lysine biosynthesis
pden00470
D-Amino acid metabolism
pden01100
Metabolic pathways
pden01110
Biosynthesis of secondary metabolites
pden01120
Microbial metabolism in diverse environments
pden01230
Biosynthesis of amino acids
Module
pden_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
F1C79_02935 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
F1C79_02935 (dapF)
Enzymes [BR:
pden01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
F1C79_02935 (dapF)
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Motif
Pfam:
DAP_epimerase
Motif
Other DBs
NCBI-ProteinID:
QEY70691
UniProt:
A0A9X7MX38
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Position
complement(595788..596624)
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AA seq
278 aa
AA seq
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MNFVKYQALGNDYLVYASDAPFALTAAQIGRVCDRHHGIGSDGILVANHSDAAFGLRILN
PDGSEAEKSGNGLRIFSRYLWDCGLVAGQPFDIVTAGGTVTSQVSDEGRTVEVSMGRAEF
ACAKIPVLIDAPEALDFALEVDGVALKINAVSMGNPHCVVFVEQTSRELACRLGPLLENH
PLFPRRTNVQFVQWLSRDALRVEIWERGAGYTLSSGTSSCAAAAVARRLGLRDGHIDLHL
AGGLLKIRVEDDFQVTMRGAVQRVAGIDLDPEAFADLG
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgtgaaataccaggccctgggcaacgactacctcgtctatgccagcgacgca
ccttttgccctgaccgctgcgcagatcggccgcgtctgcgaccgccaccacggcatcggc
tccgacggcatcctggtggcgaaccacagcgacgccgcctttggcctgcgcatcctcaac
cccgacggctccgaggcggagaaaagcggcaacggcctgcgcatcttctcccgctacctg
tgggactgcgggctggtcgccgggcagccgttcgacatcgtcaccgccggcggcaccgtc
accagccaggtgtccgacgagggccgcaccgtggaggtgtccatggggcgcgccgagttc
gcctgcgcgaagatcccggtgctgatcgatgctcccgaggcgctggactttgcgctggaa
gtcgacggcgtggcgctgaagatcaacgccgtctccatgggcaacccgcactgcgtggtg
ttcgtcgaacagaccagccgcgagctggcctgccgcctcggcccgctgctggaaaaccac
ccgctgttcccccgccgcaccaacgtgcagttcgtccagtggctatcccgcgatgcgctg
cgcgtggaaatctgggagcgcggcgccggctacacgctgtcctcgggcaccagcagctgc
gccgccgctgcggtggcgcgccggctcggcctgcgtgacgggcacatcgacctgcacctg
gccggcggcctgctgaaaatccgcgtcgaagacgacttccaggtgaccatgcgcggcgcc
gtacagcgggtcgccggcatcgacctggacccggaagccttcgccgacctcggctga
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