KEGG   Pseudomonas denitrificans (nom. rej.): F1C79_07855
Entry
F1C79_07855       CDS       T09478                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
pden  Pseudomonas denitrificans (nom. rej.)
Pathway
pden00010  Glycolysis / Gluconeogenesis
pden00020  Citrate cycle (TCA cycle)
pden00260  Glycine, serine and threonine metabolism
pden00280  Valine, leucine and isoleucine degradation
pden00310  Lysine degradation
pden00380  Tryptophan metabolism
pden00620  Pyruvate metabolism
pden00630  Glyoxylate and dicarboxylate metabolism
pden00640  Propanoate metabolism
pden00670  One carbon pool by folate
pden00785  Lipoic acid metabolism
pden01100  Metabolic pathways
pden01110  Biosynthesis of secondary metabolites
pden01120  Microbial metabolism in diverse environments
pden01200  Carbon metabolism
pden01210  2-Oxocarboxylic acid metabolism
pden01240  Biosynthesis of cofactors
Module
pden_M00009  Citrate cycle (TCA cycle, Krebs cycle)
pden_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
pden_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
pden_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:pden00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    F1C79_07855 (lpdA)
   00020 Citrate cycle (TCA cycle)
    F1C79_07855 (lpdA)
   00620 Pyruvate metabolism
    F1C79_07855 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    F1C79_07855 (lpdA)
   00640 Propanoate metabolism
    F1C79_07855 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    F1C79_07855 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    F1C79_07855 (lpdA)
   00310 Lysine degradation
    F1C79_07855 (lpdA)
   00380 Tryptophan metabolism
    F1C79_07855 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    F1C79_07855 (lpdA)
   00670 One carbon pool by folate
    F1C79_07855 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pden04147]
    F1C79_07855 (lpdA)
Enzymes [BR:pden01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     F1C79_07855 (lpdA)
Exosome [BR:pden04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   F1C79_07855 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox GIDA Pyr_redox_3 DAO NAD_binding_8 HI0933_like FAD_oxidored FAD_binding_2 UDPG_MGDP_dh_N FAD_binding_3 AlaDh_PNT_C Lys_Orn_oxgnase 3HCDH_N
Other DBs
NCBI-ProteinID: QEY71548
UniProt: A0A9X7MY45
LinkDB
Position
complement(1725169..1726575)
AA seq 468 aa
MKQNQTLETTLLVIGGGPGGYVAAIRAGQLGIRTVLVEGAALGGTCLNIGCIPSKALIHA
AEGYLKAREFAGKSPLGISVQAPSIDIQRTVEWKDGIVDRLTTGVAALLKKHGVTVVSGW
AKIVDGKTVEVDLAEGGTQHIHTEHLLLAAGSKSVELPFLPVGGNVISSTEALAPKTLPK
RLAVVGGGYIGLELGIAYRKLGVEVTVVEAQPRILPTYDEELTRPVTHSLRKLGIELYLG
HSVMGLEPDGKGLRVQDGAGSQRVIETDQVLVAVGRHPNTAGWNLDTLRLDMNGRAVQID
EQCRTSMRDVWAIGDIAGEPMLAHRAMAQGEMVAEIIAGKRRAFTPTAIPAVCFTDPEVV
VVGLSPEQAQAAGYEVLTASFPFAANGRAMTLESSDGFVRVVARKDNHLILGWQAVGKAV
SELSTAFVQSLEMAACLEDIAGTIHAHPTLGEAVQEAALRALGHALHV
NT seq 1407 nt   +upstreamnt  +downstreamnt
atgaaacagaaccagactctcgaaaccaccctgctggtgatcggtggcggccccggcggc
tacgtcgcggcgatccgcgccggccagctgggcatccgcaccgtgctggtggaaggcgcc
gccctgggcggcacttgcctgaacatcggctgcatcccgtccaaggcgctgatccacgcc
gccgaggggtacctcaaggcccgcgagttcgccggcaagtcgccgctgggcatcagcgtg
caggcgccgagcatcgatatccagcgcaccgtggaatggaaggacggcatcgtcgaccgc
ctgaccaccggcgtcgccgcgctgctgaagaagcacggcgtcaccgtggtcagcggctgg
gcgaagatcgtcgacggcaagaccgtcgaggtcgaccttgccgaaggcggcacccagcac
atccacaccgagcacctgctgctggcggccggttcgaaatccgtggaactgcccttcctg
ccggtgggtggcaatgtcatctcctccaccgaagcactggcgccgaagacactgcccaag
cgcctggcggtggtgggcggcggctacatcggcctggaactgggcatcgcgtaccgcaag
ctcggcgtggaagtcacggtggtggaagcgcagccgcgcatcctgccaacctatgacgag
gaactgaccaggccggtgacccattccctgcgcaagctgggcatcgagctgtacctgggc
cacagcgtgatgggcctggagccggacggcaaaggcctgcgcgtgcaggacggcgccggt
tcccagcgggtgatcgagaccgaccaggtgctggtcgccgtcggccgccaccccaacacc
gccggctggaacctcgacaccctgcgcctggacatgaacggccgtgccgtgcagatcgac
gagcagtgccgcacctccatgcgcgatgtctgggccatcggcgacatcgccggcgagccc
atgctggcgcaccgcgccatggcccagggcgaaatggtcgcggaaatcatcgccggcaag
cgccgcgccttcacccccacggcgatcccggcggtgtgcttcaccgacccggaagtggtg
gtggtcgggctgtcgccggaacaggcccaggccgccggctatgaggtgttgaccgcgagc
ttcccgttcgccgccaacggccgcgccatgaccctggaatccagcgacggcttcgtccgc
gtcgtggcccgcaaagacaaccacctgatcctcggctggcaggccgtgggcaaggcggtc
tcggagctgtccacggccttcgtgcagtcgctggaaatggccgcctgcctggaagacatc
gccggcaccatccacgcccacccgaccctcggcgaagcggtgcaggaagctgcgctgcgc
gcgctggggcatgccttgcacgtctga

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