Pseudomonas denitrificans (nom. rej.): F1C79_11275
Help
Entry
F1C79_11275 CDS
T09478
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F1C79_11275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pden03021
]
F1C79_11275
Transcription machinery [BR:
pden03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F1C79_11275
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
HTH_23
Sigma70_ECF
Sigma70_r4
HTH_11
HTH_28
TnsD
HTH_38
HTH_17
HTH_24
GerE
HTH_29
HTH_3
TetR_N
HTH_36
HTH_10
HTH_7
HTH_Mga
HTH_40
Xre-like-HTH
HTH_SB
LacI
Trp_repressor
MerR
NUMOD1
Terminase_5
RsmI_C
Motif
Other DBs
NCBI-ProteinID:
QEY72145
UniProt:
A0A9X7R4Z8
LinkDB
All DBs
Position
2512673..2513206
Genome browser
AA seq
177 aa
AA seq
DB search
MTRPIACAHRAQVASLYRENHGWIQQWINRRLGNASDAAELAQDVFVRLLAQPREFESDV
HARAYLSRISLHLCVDFWRRKQLEKAWLEALALVPESHWPSQEHQAIILETLGQLQDLLE
RLPPKVAAAFSLSQLHGMGYREIAEELGVSVRTVTKYIAQAMFQCALLEAELDGVLQ
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgacacgacccatcgcctgcgcccatcgagcccaagtggccagcctctaccgcgagaac
cacggctggatccagcagtggatcaatcgtcgcctgggcaatgccagcgatgctgccgag
ctggcccaggacgtcttcgtgcgcttgctggcgcagccacgggagttcgagagcgacgtc
cacgcccgcgcctacctgagccgcatctcgctgcacctgtgcgtcgatttctggcgccgc
aagcaattggagaaggcctggctcgaagccctggcgctggtaccggaaagccattggccg
tcgcaggagcaccaggcgatcatcctggaaacccttggccagctgcaggacctgctggaa
cggctgccgcccaaggtcgccgccgccttcagcctgtcgcagctgcacggcatgggttac
cgggagatcgccgaggagcttggcgtttcggtccgtacggtgaccaagtacatcgcccag
gccatgttccagtgcgccctgctcgaggcggaactggacggagtgctgcaatga
DBGET
integrated database retrieval system
