Pseudomonas denitrificans (nom. rej.): F1C79_12015
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Entry
F1C79_12015 CDS
T09478
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F1C79_12015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pden03021
]
F1C79_12015
Transcription machinery [BR:
pden03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F1C79_12015
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
PhyR_sigma-like
Sigma70_ECF
HTH_24
HTH_23
GerE
HTH_11
HTH_29
HTH_31
HTH_3
Xre-like-HTH
HTH_40
TnsD
HTH_Tnp_4
HTH_7
HTH_20
DUF1804
HTH_10
HTH_28
HTH_36
Motif
Other DBs
NCBI-ProteinID:
QEY72276
UniProt:
A0A9X7R492
LinkDB
All DBs
Position
2690897..2691406
Genome browser
AA seq
169 aa
AA seq
DB search
MQGDSSLQAVGMLYRDHHGWLRGWLRKRLNDAADAADLAQDTFVRVLMARSAEAIREPRH
YLQTIARGLVIDLYRRRSLERAYLEALALLPEAVQPSLEEQALLLEALQEIDRMLDGLGP
KVRQAFILSQLEGLTYNQIAERLGISLRTVNKYMAKAMEHCCLAMAGVL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgcagggggattcgtcgctgcaggcggtagggatgctttaccgcgaccatcatggctgg
ctgcgtggctggctgcgcaagcgcctcaacgatgccgccgatgctgctgacctggcgcag
gacaccttcgttcgcgtgctgatggcccggagcgccgaggcgatccgcgagccccggcac
tacctgcagaccatcgcccggggcctggtcatcgacctgtaccgccgccgttcgctggag
cgcgcctatctggaggcgctggcgctgctgcccgaagcggtacagccgtccctcgaggaa
caggcgctgctgctcgaggcgctgcaggaaatcgaccggatgctcgatggcctggggccg
aaggtccggcaggccttcatcctttcccagctcgaagggctgacctacaaccagatcgcc
gagcgactgggtatctccctgcgcacggtgaacaagtacatggccaaggccatggagcac
tgctgcctggccatggcgggagtcctgtga
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