Pseudomonas denitrificans (nom. rej.): F1C79_13015
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Entry
F1C79_13015 CDS
T09478
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C79_13015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pden03019
]
F1C79_13015
03009 Ribosome biogenesis [BR:
pden03009
]
F1C79_13015
Enzymes [BR:
pden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1C79_13015
Messenger RNA biogenesis [BR:
pden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C79_13015
Ribosome biogenesis [BR:
pden03009
]
Prokaryotic type
rRNA helicases
F1C79_13015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEY72448
UniProt:
A0A9X7MZP0
LinkDB
All DBs
Position
complement(2894696..2896393)
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AA seq
565 aa
AA seq
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MTQETAGFAALGLHPNVLAAIAAVGYEEPSPIQAQSIPVILEGHDMIGQAQTGTGKTAAF
ALPMLSQIEPSRRVPQVLVLVPTRELALQVATAFETYSKQMPGVGVIAVYGGAPMGPQLK
ALRQGAQVVVATPGRLCDHLRRDENLLSTVKSLVLDEADEMLKLGFMDDLEVIFEAMPSS
RQSVLFSATLPASIRSIAERHLKEPKHVRIAAKTQTVARIEQAHLMVHADQKPASILRLL
EVEQFDALIGFVRTKQATLDIAELLERQGYRAAALNGDMPQAQRERVIESLKDGSLDIVI
ATDVAARGLDVARITHVLNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVGEVRLPDAETVLEARLNRLATGLQPLLANAVASRGAVRDELCRRLGTDMDTL
AAVLLAKLTEGKALDLESVRREQPLTPAAPRERSDRYERSERGDRPERGDRPERSGAPRT
MAPPSEGKARCRTALGARDGVQAKNLLGAILNEGGLSREAIGRIQIRETFSLIELPEENL
DRLLTKLKDTRVAGKALRLRRYRED
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccgccggcttcgccgcgctcggtcttcaccccaatgttctcgctgcc
attgccgctgtcggttatgaagagccgtcgccgatccaggcccagtcgatcccggtgatc
ctcgaaggccacgacatgatcggccaggcccagaccggtaccggcaagaccgctgccttt
gcgctgccgatgctgtcgcagatcgagccgagccgtcgcgttccgcaggtgctggtactg
gtaccgacccgcgagctggccctgcaggttgctaccgctttcgaaacctattccaagcag
atgccgggcgtcggcgtgattgccgtctacggcggcgcgcccatgggcccgcagctgaag
gccctgcgccagggcgcccaggtcgtggtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaacctgctgtccaccgtcaagagcctggtgctcgacgaagcggacgag
atgctcaagctcggcttcatggacgacctcgaagtgatcttcgaagccatgccgtccagc
cgccagagcgtgctgttctccgcgaccctgccggcctcgatccgcagcatcgccgaacgc
cacctgaaagaacccaagcacgtccgcatcgctgccaagacccagactgtcgcccgcatc
gagcaggcgcacctgatggttcacgccgaccagaagccggcctcgatcctgcgtctgctg
gaagtcgagcagttcgacgcgctgatcggtttcgtccgcaccaagcaggccaccctggac
atcgccgagctgctcgagcgccagggctaccgtgccgccgcgctgaacggcgacatgccg
caggcccagcgtgagcgcgtgatcgagtccctgaaggatggctcgctggacatcgtcatc
gccaccgacgtcgccgcccgcggcctcgacgtggcgcgcatcacccacgtactgaacgtg
gacatgccctacgatccggaatcctacgtacaccgtatcggccgtaccggccgcgccggt
cgtgaaggccgcgccctgctgctggtgactccgcgtgagcgccgcatgctgcaggtgatc
gagcgcgtgaccgggcagaaggttggcgaagttcgcctgccggacgccgaaaccgtcctc
gaagcccgtctgaaccgcctggccaccggcctgcaaccgctgctggccaacgccgttgcc
agccgtggcgccgtgcgtgacgagctgtgccgtcgcctgggtaccgacatggacaccctg
gccgccgtgctgctggccaagctgaccgaaggcaaggcgctggacctggaatcggtccgc
cgcgaacagccgctgaccccggccgccccgcgtgagcgcagcgaccgttacgagcgcagc
gagcgtggcgatcgccccgagcgcggcgaccgtccggagcgcagtggcgcaccccgcacc
atggctccgccttcggaaggcaaggcccgttgccgtactgccctgggcgcccgtgacggc
gtgcaggcgaagaacctgctgggcgccatcctcaacgagggcggcctgtcccgcgaggcc
atcggccgcatccaaatccgcgagaccttcagcctgatcgagctgccggaagagaacctc
gaccgtctgctgaccaagctcaaggacacccgcgtcgctggcaaggccctgcgtctgcgt
cgttatcgcgaagactga
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