Pseudomonas denitrificans (nom. rej.): F1C79_13145
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Entry
F1C79_13145 CDS
T09478
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pden03016
]
F1C79_13145 (thpR)
Enzymes [BR:
pden01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
F1C79_13145 (thpR)
Transfer RNA biogenesis [BR:
pden03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
F1C79_13145 (thpR)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
UPF0728
AKAP7_NLS
Anillin_N
Motif
Other DBs
NCBI-ProteinID:
QEY75984
UniProt:
A0A9X7R7U7
LinkDB
All DBs
Position
2919867..2920370
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AA seq
167 aa
AA seq
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MRLFFALPCPAELAARICTWRDSLHHDGQPVSQANLHLTLAFLGSVPRGRKAELRAIGER
LPHQGFNLELDHIARWNNGILHLAPSNAPAALHELVHALREELHAGGFEVEHRPFHPHIT
LARHAHHTPTAQAAFLLPAQAVTLFSSENSPTGVRYRAIGEWPLDSV
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgttcttcgccctgccctgcccggctgaactggcggcgcgcatctgcacctgg
cgcgacagcctgcaccacgacggccagcccgtatcccaggccaacctgcacctgacactg
gcctttctcggctccgtgccgcgcgggcgcaaggccgaattgcgcgccatcggcgaacgc
ctgccacaccagggcttcaaccttgaactggaccacattgcgcgctggaacaacggcatc
ctgcacctggcgcccagcaacgcgccggccgccctgcacgaactggtgcacgccctgcgc
gaagagctgcatgccggtggattcgaagtcgagcatcgcccgttccatccgcatatcacg
ctcgctcgccatgcccaccatacgccgacggcccaagccgccttcctgctgccagcccag
gcggtgacgctgttcagctcggagaacagccccaccggggtgcgctaccgcgccatcggc
gagtggccgctagacagcgtctga
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