Pseudomonas denitrificans (nom. rej.): F1C79_16670
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Entry
F1C79_16670 CDS
T09478
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pden03019
]
F1C79_16670 (hrpA)
Enzymes [BR:
pden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F1C79_16670 (hrpA)
Messenger RNA biogenesis [BR:
pden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F1C79_16670 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
ABC_tran
NACHT
T2SSE
AAA_25
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
QEY73104
UniProt:
A0A9X7R571
LinkDB
All DBs
Position
complement(3628784..3632803)
Genome browser
AA seq
1339 aa
AA seq
DB search
MTTDSTPTPEQLLQRMDHAMIRDRHRLRRQLHELRKHPDEAKLAQWAERFQASCAKAEAR
RASIPKIRYDDSLPIAAKRDEIKAALEKSQVVVIAGETGSGKTTQLPKICLELGRGTHGL
IGHTQPRRLAARSVATRVAEEIGTPLGSLVGYQVRFEDQSDDSTLIKLMTDGILLAETQH
DRYLERYDTIIVDEAHERSLNIDFLLGFLKTLLHRRPDLKLIITSATIDLERFSKHFGDA
PIVEVSGRTYPVDTWYRPLAAEVDEDGEALFDDLSVDQGILRALDEIAAHEREIGKRPGD
VLVFLPGEREIRDAADMLRKANLRHTEVLPLYARLTPAEQQKIFAPMPGRKIVLATNVAE
TSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLY
SEEDFNGRPAFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAINDGFTLLQEL
SAVNREGQLAPLGRQLARLPIDPRLGRMLLEAAQLGSLPEVLTVASALSVQDPRERPMDR
QQAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNPLRNWCRKNFLNYLRLREWRDA
HRQLTLICRELQLPFGSKSDGAQRKNEPARAQATQHDNRGRQPVAKADEPKARDIDYAAV
HKAILSGLLSQIGQKAEEGDYLGARQRRFWIHPSSVIGRKKPQWIMAAELVETTKLFARM
VAKIEPDWLEPLAGHLVKKNYLEPHWEKRRGQVVAYEQVTLYGLIIIGRRPVNYGPIDAP
VSREMFIREALVRGEINSRAKCLAANRQLLEKLDELEAKARRRDILADEETLFAYYDERL
PADICQSASFEKWYEREHKQQPDLLIMREEDVLARDASEVTAGLYPDRLRLGDLQLPLTY
HFEPGHVRDGVTVRVPAPLLPQLPAERLEWLVPGLLEAKCIELVRSLPKAIRKNFVPVPD
FVRAALGKMVFAEGGLSESLGRELQRMTGSRVPEEAWAEAETQVESHLRMNIEVVDARGK
FLGEGRDLVELTARFAEASQAALAIPQADKPQKPVEAKGFGEVAEKLQQKVAGLSMTVYP
ALVEEAGVVKENRFPTQAEADYQHRRALQRLLLQQLAEPAKFLRSKLPGQTDMGLLYREL
GRVESLVEDILLASLESAILDGESNLPRDGAGLASLAEKKRGAWTEHAERIARLTLEILK
LWHGLQKRFKGKVDLAMTVPLNDVKGQLAKLVYPGFVRDTPLEWLKEYPRYLKAVEQRLD
KVAGQVQRDRVWSGEMAGYWEQYSARLAKHAQEGKRDPELVMYRWMLEEYRVSLFAQQLG
TKVPVSDKRLSKQWSQVEA
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgaccacagacagtacgccgacccccgaacagctcctgcagcgcatggatcacgcgatg
atccgcgaccgccatcgcctgcgccggcagctccacgaactgcgcaagcaccccgacgag
gccaagctcgcccagtgggccgagcgcttccaggcctcctgcgccaaggccgaggcacgt
cgtgcgagcatcccgaagatccgctacgacgacagcctgcccatcgccgccaagcgcgac
gagatcaaggccgcgctggaaaagagccaggtggtggtgatcgccggcgagaccggctcg
ggcaagaccacccagctgccgaagatctgcctggagctgggccgtggcacccatggcctg
atcggccacacccagccgcgccggctcgccgcgcgcagcgtggcgacccgcgttgccgag
gagatcggcacgccgctgggttcgctggttggctaccaggtgcgtttcgaagaccagagc
gacgacagcacgctgatcaagctgatgaccgacggcatcctgctggccgagacccagcat
gaccgttacctcgagcgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctg
aacatcgacttcctgctcggcttcctgaaaaccctgctgcaccgccggccggacctgaag
ctgatcatcacgtcggcgaccatcgacctggaacgcttctccaaacactttggcgatgcg
cccatcgtcgaggtctcggggcgcacctacccggtggacacctggtaccgcccgctggcg
gcggaagtagacgaggacggcgaagcgctgttcgacgacctctccgtggaccagggcatc
ctccgcgcgctggacgagatcgccgcccacgagcgcgaaatcggcaagcgccccggcgac
gtgctggtgttcctccccggtgagcgcgagattcgcgacgccgccgacatgctgcgcaag
gccaacctgcgccacaccgaagtgctgccgctctatgcgcggctgacaccggccgagcag
cagaagatcttcgcgcccatgccggggcgcaagatcgtgctcgccaccaacgtcgcggaa
acctcgctgacggtgccgggcatccgctacgtgatcgacagcggcaccgcgcggatcagc
cgctacagctatcgcgccaaggtccagcgcctgcccatcgaagccgtctcgcaagccagc
gccaaccagcgcaagggccgttgcggccgggtcgagccgggcatctgcgtgcgcctgtac
agcgaggaagacttcaacggccgcccggccttcaccgatccggaaatcctgcgcaccaac
ctcgcggcggtgatcctgcagatgctgcacctgcgcctgggtgacatcgaggccttcccc
ttcatcgagccgccggacggcaaggcgatcaacgacggcttcaccctgctgcaggagctc
tcggcggtgaaccgcgagggccagctggcgccgctgggccgccagctggcgcgcctgccc
atcgacccgcggctgggccgcatgctgctggaagcggcgcaactgggcagcctgcccgaa
gtgctcaccgtggccagcgcgctgtccgtgcaggacccgcgcgagcggccgatggaccgc
cagcaggccgccgaccaggcccacgcgcagtggaaggacccggactcggacttcgcggcg
ctgatcaacctctggcgcggcttcgaggagcagcgccaggcgctgggctccaacccgctg
cgcaactggtgccggaagaacttcctgaattacctgcgccttcgcgaatggcgcgatgcg
caccgccagctgacgctgatctgccgcgaactgcagctgcccttcggctccaaatctgac
ggcgcccagcgcaagaacgagcccgctcgcgcgcaggccacgcagcacgacaaccgtggc
cgtcagccggtcgccaaggcggacgagccgaaggcccgtgacatcgactacgccgccgtg
cacaaggcgatcctctccggcctgctcagccagataggccagaaggcggaggagggcgat
tacctcggcgcgcgccagaggcgtttctggattcacccctccagcgtgatcggtcgcaag
aagccgcaatggatcatggccgccgagctggtggagaccaccaagctgtttgcccgcatg
gtcgcgaagatcgagccggactggctggagccgctggccgggcacctggtgaagaaaaac
tacctggagccgcactgggaaaaacgccgtggccaggtggtggcctacgagcaggtcacc
ctctacggcctgatcatcatcggccgtcgcccggtgaactacggcccgatcgacgcgccg
gtgtcccgcgagatgttcatccgcgaggcgctggtgcgtggcgagatcaacagccgcgcc
aagtgcctggcagccaaccgccagttgctggagaagctcgacgagctggaagccaaggca
cgccggcgcgacatcctcgccgacgaggaaaccctgttcgcctactacgacgagcgcctg
ccggcggacatctgccagtccgccagcttcgagaagtggtacgagcgtgagcacaagcag
cagccggacctgctgatcatgcgcgaggaagacgtcctcgcccgcgacgccagcgaagtc
accgccggcctctacccggaccgcctgcgcctgggcgacctgcagctgccgctcacctac
cacttcgagcccggccacgtgcgcgacggcgtgaccgtgcgcgtgccggctccgctgctg
ccgcagctgcccgccgaacgcctggaatggctggtgccggggctgctggaggccaagtgc
atcgagctggtgcgcagcctgccgaaggcgatccgcaagaatttcgtgccggtgccggac
ttcgtccgcgccgcgctgggcaagatggtcttcgccgagggcgggttgtccgaatccctc
ggccgcgagctgcagcgcatgaccggcagccgcgtaccggaagaagcctgggcggaggcc
gagactcaggtggaaagccacctgcggatgaacatcgaagtggtcgacgcccgtggcaag
ttcctcggcgaaggccgcgacctcgttgaactcaccgcgcgcttcgccgaggccagccag
gccgcgctggcgatcccgcaggcggacaagccgcagaagccggtggaagccaagggcttt
ggcgaagtcgcggagaagctccagcagaaggtcgccgggctgtcgatgacggtctacccg
gcgctggtggaagaggccggcgtggtgaaggaaaaccgtttcccgacccaggccgaggcc
gactaccagcaccgccgcgccctgcagcgcctgctgctgcaacagctcgcggagccggcc
aagttcctgcgcagcaagctgccgggccagaccgacatgggcctgctctaccgcgaactg
ggccgcgtcgagtcgctggtggaggacatcctgctggccagcctggagagcgccattctc
gacggcgaaagcaacctgccgcgcgatggcgccgggctcgcgtcgctggccgagaagaag
cgcggcgcctggaccgaacacgccgagcgcatcgcccgtctgaccctggaaatcctcaag
ctctggcacggcctgcagaagcgcttcaaaggcaaggtcgacctagccatgacggtgccg
ctgaacgacgtgaaggggcagctggccaagctggtctacccaggcttcgtccgcgatacg
ccgctggaatggctgaaggaatacccgcgctacctgaaggcggtcgagcagcgtctggac
aaggtcgccgggcaggtccagcgcgaccgcgtgtggagcggcgagatggccggctactgg
gaacagtactcggcgcgcctggccaagcacgcccaggaaggcaagcgcgacccggaactg
gtgatgtaccgctggatgctggaggaataccgcgtctcgctgttcgcccagcaattgggg
acgaaggtgccggtgtcggacaagcgcctgtcgaagcagtggagccaggtcgaggcctga
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