Pseudomonas denitrificans (nom. rej.): F1C79_16735
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Entry
F1C79_16735 CDS
T09478
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pden03021
]
F1C79_16735 (rapA)
Transcription machinery [BR:
pden03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
F1C79_16735 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
SF-assemblin
Motif
Other DBs
NCBI-ProteinID:
QEY73117
UniProt:
A0A9X7R550
LinkDB
All DBs
Position
3646788..3649634
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AA seq
948 aa
AA seq
DB search
MAQYQPGQRWISDSEAELGLGTILALDGRMLTVLYPATGDTRQYAERNAPLTRVRFAPGD
QITHFEGWKMTVREVDEIDGLLIYHGITAQNEQHTVPETQLSNFIQFRLASDRLFAGQID
PMSWFGLRYHTLEHRTRLLQSSLWGLGGARAQPIAHQLHIAREVADRMAPRVLLADEVGL
GKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLEVALFDRERFVESDAS
NPFEDTQLALVALEWLREDEKAQDALFAAEWDLLVVDEAHHLVWHPEQASAEYQLVEQLS
QVIPGVLLLTATPEQLGLDSHFARLRLLDPDRFHDLEAFRTESTQYRPVAEAVQELVDQG
SLSPAARQAIHGFLGSAGDELLASVEAGNEDARARLVRELLDRHGTGRVLFRNTRAAVQG
FPERQLHPYVLTNPIEYMELPLGEHPDLYPEVSFQAQAEDGDENARWWRFDPRVDWLIDT
LKMLKQYKVLVICAHAETALDLGDALRVKSGIPASAFHEGMSILERDRSAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPAHPDQLEQRIGRLDRIGQKHTIQIHVPHLENSP
QERLFQWYHQALNAFLNTCPTGNALQHRFGPRLVELLDGGDDDAFAALLAEGTAAREALE
AEMHNGRDRLLELNSGGAGEGEALVEEIEEQDDQFALPIYMERLFDTYGIDSEDHSENAL
ILRPSEKMLDASFPLGDDEGVTVTYDRAQALAREDMQFLTWEHPMVQGGMDLVLSGSLGN
TSVALIKNKALKPGTVLLELLFVSEAVAPRKLQLGRFLPPVALRCLMDANGNDLSSRVSF
ETLNDQLESVPRASANKFVQAQRDVLAKQFAQAETKITPRHAERVEAARQQLTATLDEEL
ARLTALKAVNPSVRDSELDALRKQRDDSLALLDKASLRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtatcaacccggtcaacgctggatcagcgacagtgaagcggaactcggcctg
gggaccatcctggcgctggacggccgcatgctcacggtgctctatcccgccaccggtgat
acccgccagtacgccgagcgcaatgcgccgctgacccgtgtgcgcttcgccccaggcgat
cagatcacccatttcgaaggctggaagatgaccgtccgcgaagtggacgagatcgacggc
ctgctgatctaccacggcatcaccgcgcagaacgagcagcacaccgtcccggaaacccag
ctgtcgaacttcatccagttccgcctggccagcgaccgcctgttcgccgggcagatcgac
ccgatgtcctggttcggcctgcgctaccacaccctggaacaccgcacccgcctgctgcag
tcctcgctctggggcctgggcggcgcccgcgcgcaacccatcgcgcaccagctgcatatc
gcccgcgaagtcgccgaccgcatggcgccgcgcgtcctgctggccgacgaagtgggcctg
ggcaagaccatcgaagcgggcctggtgatccatcgccagctgctctccggccgcgccagt
cgcgtactgatcctggtgccggaaaacctgcagcaccagtggctggtggaaatgcgccgg
cgcttcaacctggaagtcgccctgttcgaccgcgagcgtttcgtcgagagcgatgccagc
aaccccttcgaagacacccagctggccctggtggcactggagtggctgcgcgaggacgag
aaggcccaggacgcgctgttcgccgccgagtgggacctgctggtggtcgacgaagcccac
cacctcgtgtggcacccggaacaggccagcgccgaataccagttggtcgaacaactctcc
caggtcatccccggcgtgctgctgctcaccgcgaccccggaacagctcggcctggacagc
cacttcgcccgtctgcgcctgctcgacccggaccgcttccacgatctggaagccttccgc
accgaaagcacccagtaccgcccggtcgccgaagcggtgcaggagctggtggaccagggc
agcctctcccccgccgctcgccaggccatccatggcttcctcggcagcgcgggcgacgag
ctgctggccagcgtcgaggccggcaatgaagatgcccgcgcccgcctggtacgcgaactg
ctcgaccgccacggcaccggccgcgtgctgttccgcaacacccgcgccgccgtgcagggc
ttcccggagcgccagctgcatccctatgtgctgaccaacccgatcgagtacatggaactg
ccgctgggcgagcacccggacctctacccggaagtcagcttccaggcacaggccgaggac
ggcgacgagaacgcccgctggtggcgcttcgacccgcgcgtcgactggctgatcgacacc
ctgaagatgctcaagcagtacaaggtgctggtgatctgcgcccacgccgagaccgccctg
gacctgggcgacgcgctgcgcgtgaagtccggcatcccggccagcgcgttccacgagggc
atgagcatccttgagcgcgaccgctccgccgcctacttcgccgatgaagaattcggcgcg
caggtgctgatctgttcggaaatcggcagcgaaggccgcaacttccagttcgcccatcac
ctggtgctgttcgacctgccggcccacccggaccagctggagcagcgcatcggccgcctc
gaccggatcggccagaagcacaccatccagatccacgtgccgcacctggagaacagcccg
caggaacgcctgttccagtggtaccaccaggcgctcaacgccttcctcaacacctgcccc
accggcaacgccctgcagcatcgcttcggcccgcgcctggtggaactgctggacggcggc
gacgacgacgccttcgcggccctgctggccgaaggcaccgccgcccgcgaagcgctggaa
gccgagatgcacaacggccgcgaccgcctgctggagctgaactccggtggcgccggcgag
ggcgaggcgctggtggaagagatcgaggagcaggacgaccagttcgccctgccgatctac
atggaacgcctgttcgacacctacggcatcgacagcgaggaccactccgagaacgcgctg
atcctgcgcccgagcgagaagatgctcgacgccagcttcccactgggcgacgacgaaggc
gtgaccgtcacctacgaccgcgcccaggccctggcccgcgaagacatgcagttcctcacc
tgggaacaccccatggtgcagggcggcatggacctggtgctgtccggctcgctgggcaac
acctcggtggcgctgatcaagaacaaggcgctcaagcccggcaccgtgctgctggaactc
ctgttcgtcagcgaagccgtggcgccgcgcaagctgcagctgggccgcttcctgccgccg
gtggcgctgcgctgcctgatggacgccaacggcaacgacctgtcctcgcgtgtgtccttc
gagaccctgaacgaccagctggaaagcgtgccgcgcgccagcgccaacaagttcgtgcag
gcgcagcgtgatgtgctggccaagcagttcgcccaggccgagaccaagatcaccccgcgc
catgccgagcgcgtcgaagcggcccgccagcagttgaccgcgaccctggacgaggaactg
gcgcgcctgaccgcgctcaaggccgtcaaccccagcgtccgcgacagcgagctggacgcc
ctgcgcaagcagcgcgacgacagcctggcgctgctggacaaggcctccctgcgcctggaa
gcgatccgcgtactggtcgcaggctga
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