Pseudomonas denitrificans (nom. rej.): F1C79_17785
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Entry
F1C79_17785 CDS
T09478
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C79_17785 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pden03019
]
F1C79_17785 (rhlB)
Enzymes [BR:
pden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1C79_17785 (rhlB)
Messenger RNA biogenesis [BR:
pden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C79_17785 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
QEY73303
UniProt:
A0A9X7N1A2
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All DBs
Position
3846993..3848591
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AA seq
532 aa
AA seq
DB search
MHYTGGRSFLNQYETNVLKALKKIFSKGDGEQPVTTPAAPAPAASQPAPSGEKRPRKPRN
PRPEGDNGEKPARGPKSDKPRAERSDKGERGEKREHAPKQEHAKAEGADKPREPKPRRER
KPRPPVVDNWKLEDFVVEPAEGKTRFHDFNLDPRLMHAIHDLGFPYCTPIQAQVLGFTLR
GQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRALIIAPTRELVVQIANDAL
GLAKYTGLNVMSFVGGMDFDKQLKTLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVL
DEADRMLDMGFIPQVRQIIRQTPYKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPE
NVASDTVEQHVYAVAGSDKYKLLYNLIAQNDWTRVMVFANRKDEVRRIEERLTKDGISAA
QMSGDVPQHKRIKVLEGFREGKIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRI
GRTGRAGSTGTSISFAGEDDAFALPPIEELLGRKINCEMPPTELLKPVPRKH
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
ttgcattacactggcggccgttcattccttaaccagtacgagaccaacgtgctcaaagca
ctcaagaaaatcttcagcaagggtgatggcgagcagcccgtcaccacgccggcagccccc
gcacccgctgcctcccagcccgccccgagcggcgaaaagcgtccgcgcaaaccgcgcaat
ccgcgccccgaaggcgacaacggcgagaagccggcccgcggcccgaagagcgacaaaccc
cgcgccgagcgttccgacaaaggcgaacgcggcgaaaaacgcgagcacgcgccgaagcag
gagcatgccaaggccgagggtgccgacaagccccgcgagccgaaaccgcgccgcgagcgc
aagccgcgcccgccggtggtggacaactggaagctggaagacttcgtggtcgagccggcc
gaaggcaagacgcgcttccacgacttcaacctcgacccgcgcctgatgcacgccatccat
gacctgggcttcccgtactgcacgccgatccaggcacaggtactgggcttcaccctgcgt
ggccaggacgccatcggccgcgcccagaccggcaccggcaagaccgccgcgttcctcatc
tcgatcatcacccagctgctgcagaccccgccgcccaaagagcgctacatgggcgagccg
cgtgcgctgatcatcgcgccgacccgcgagctggtggtgcagatcgccaacgacgccctc
ggcctggccaagtacaccggcctgaatgtcatgagcttcgtcggcggcatggacttcgac
aagcagctcaagaccctggaatcgcgcttctgcgacatcctggtcgccacccccggccgc
ctgctggacttcaaccagcgcggcgaggtgcacctggacatggtcgaggtgatggtgctg
gacgaagctgaccgcatgctcgacatgggcttcatcccgcaggtccgccagatcatccgc
cagaccccgtacaagggcgagcgccagaccctgctgttctccgccaccttcaccgacgac
gtgatgaacctggccaagcagtggaccgtcgacccggccatcgtcgagatcgagccggaa
aacgtcgccagcgataccgtcgagcagcacgtctatgccgttgccggcagcgacaagtac
aagctgctgtacaacctgatcgcgcagaacgactggacccgcgtgatggtcttcgccaac
cgcaaggacgaggtgcgtcgcatcgaggaacgcctgaccaaggacggcatcagcgccgcc
cagatgtccggcgacgtgccgcagcacaagcgcatcaaggtcctggaaggcttccgtgaa
ggcaagatccgcgtcctggtcgccaccgacgtcgccggccgcggcatccacgtcgacggc
atcagccacgtaatcaacttcaccctgcccgaagacccggacgactacgtgcaccgcatc
ggccgtaccggccgcgccggcagcaccggtacctccatcagcttcgctggcgaggacgat
gccttcgccctgccgccgatcgaggaactgctgggccgcaagatcaactgcgaaatgccg
cccaccgagctgctcaagccggtaccgcgcaagcactga
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