Pseudomonas denitrificans (nom. rej.): F1C79_27480
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Entry
F1C79_27480 CDS
T09478
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
F1C79_27480 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pden03021
]
F1C79_27480 (rpoD)
Transcription machinery [BR:
pden03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F1C79_27480 (rpoD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GBP_C
Motif
Other DBs
NCBI-ProteinID:
QEY75065
UniProt:
A0A9X7N7E7
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Position
complement(5932170..5934023)
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAETDTDEAAAEEAAAALAAVESDVGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAQFPGAVDGILEEYNRIVAEGGRLSDVLSGYIDPDDGTLPAEEV
EPVGLKDDAEAKDKDKDEEDEESDGDSEEEEGDGGPDPEEAARRFGAVSEQLEKAKKALK
KHGRGSKQATEELVALAELFMPIKLVPKQFDVLVAKVRDALDSVRRQERAIMQLCVRDAR
MPRADFLRQFPGHETDTAWVDSVLKGKPKYAEAIERLRDDILRNQQKLVDLETSSQLTVA
EIKDVNRSMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEVAT
SESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcaatctcgtctcaaagagttgatcacccgtggtcgtgag
cagggttacctgacttacgcggaggtcaacgaccacctgccggaggatatctctgatccg
gaacaggtagaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagaca
gccccggatgcggatgccctgctgctggcggaaaccgataccgatgaagctgccgccgaa
gaagctgctgccgccctcgctgcggtagagagcgacgttggccgcacgaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtggaactgctgacccgcgaaggcgagatcgaa
atcgccaaacgcatcgaggaaggcatccgcgaggtcatgagcgccatcgcccagttcccg
ggcgcggtggacggcattctcgaagagtacaaccgcatcgtcgccgaaggcggccgcctg
tctgacgtcctcagtggctatatcgacccggatgacggcaccctgccggccgaagaagtc
gagccggtcggtctgaaagacgacgccgaagccaaggacaaggataaggacgaagaggac
gaagagtccgacggcgacagcgaggaagaagaaggcgacggcggtccggatccggaagaa
gccgctcgtcgtttcggcgccgtttccgagcagctggaaaaagccaagaaggccctgaag
aagcacggccgtggcagcaagcaggcgaccgaagaactggtcgccctggccgaactgttc
atgccgatcaagctcgtgcccaagcagttcgacgtgctggtcgccaaggtccgcgatgcg
ctggacagcgtccgccgccaggaacgcgccatcatgcagctgtgcgtgcgtgatgcccgc
atgccgcgtgccgacttcctgcgccagttccccggccacgaaaccgacaccgcctgggtc
gactccgtactcaagggcaagcccaagtacgccgaggccatcgagcgcctgcgtgacgac
atcctgcgcaaccagcagaagctggtcgacctggaaaccagctcgcagctgaccgttgcc
gagatcaaggacgtcaaccgctccatgtccatcggcgaggcgaaagcccgtcgtgcgaaa
aaggagatggtggaggcgaacctgcgtctggtgatctccatcgccaagaagtacaccaac
cgcggtctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggattcgc
caggcgatcacccgttcgatcgccgaccaggcccgcaccatccgtattccggtgcacatg
atcgagacgatcaacaagctcaaccgtatctcccgccagatgctgcaggagatgggccgt
gaaccgaccccggaagagctgggcgaacgcatggacatgccggaagacaagatccgcaag
gtcctgaagatcgccaaagaaccgatctccatggaaacgccgatcggtgacgacgaagac
tcgcacctgggcgacttcatcgaggactccaccatgcagtcgccgatcgaagtggcgacc
agcgagagcctcaaggaagccacccgcgaagtcctcgccggcctcaccgctcgcgaagcc
aaggtcctgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtaacccgtgagcgtatccgccagatcgaagccaaggcgctgcgc
aagctgcgccacccgtcgcgaagcgagcatctgcgctccttcctcgacgagtga
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