Pseudomonas denitrificans (nom. rej.): F1C79_29065
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Entry
F1C79_29065 CDS
T09478
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pden03019
]
F1C79_29065 (hrpB)
Enzymes [BR:
pden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F1C79_29065 (hrpB)
Messenger RNA biogenesis [BR:
pden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F1C79_29065 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
AAA_30
Cas3-like_C_2
Mg_chelatase
Flavi_DEAD
AAA_19
DUF7744
Motif
Other DBs
NCBI-ProteinID:
QEY75350
UniProt:
A0A9X7N870
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All DBs
Position
6226541..6229072
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AA seq
843 aa
AA seq
DB search
MNALPIDSVLPALRQALAGRHEVVLEAPPGAGKTTRVPLALLDEAWLGGQSILMLEPRRL
AARAAAERLAAELGEKVGETVGYRIRLDSKVGPRTRIEVVTEGILARRLQDDPALEGVGL
VIFDEFHERSLDADLALALTLNGRALLRDEPPLKVLVMSATLEGERLSALLDDAPVVRSE
GRMFPVDIRWGRPWQAGEFIEPRVVQTVLQALADEPGSLLVFLPGQAEIRRVAEQLGEAL
AGRSDVLLCPLHGELDLDAQRAAIEPAPAGKRKVVLATNIAETSLTIDGVRVVVDAGLAR
VPRFDPGSGMTRLETQRISRASATQRAGRAGRLEPGACYRLWSEAQHDQLPAYGAAEILQ
ADLAGLALQLARWGVAPQELAWLDLPPAAAYAQAQDLLERLGALASRAGGGSLTPHGQAM
AEVPAHPRIAHLLLRGHALGLGQLACDLAALLGERDILRGSDADLHHRIALLAGEQNGPR
ASRGAVQRVRQLARQFKGYLRGPAREPVADPDHPRWLGGLLAFAYPDRIARQRRAGGGEY
RLANGRAALFGEPDALMKEAWLVVADLGSRQGQREERIYLAAALEPGLFESILAEQVSVH
DELEWDEREGVLRAERQRKVGELVLSTEALPNLDAEARSRALLGLVRRKGLELLPWTPEL
RQWQARIALLRRLDLEGKGESEWPDVSDAALLVPLEDWLLPYLGKVSRLSHFANLELSGI
LHGLLPWPLPQRLDELAPRALQVPSGSTIRLDYSEFPPVLAVRLQELFGLADTPRIAGGR
VAVKLHLLSPAQRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLIAEPTARAKP
RKG
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcccttcccatcgacagcgtccttcccgccctgcgccaggccctggccgggcgc
cacgaggtggtgctggaggcgccgcccggcgccggcaagaccacccgcgtgccgctggcg
ctgctggatgaggcgtggctgggcgggcagtcgatcctgatgctggaaccgcgccgcctg
gccgctcgcgccgccgctgaaagattggccgcagagctgggcgagaaggtcggcgagacc
gttggctaccgcatccgcctggacagcaaggtcggccccaggacgcgcatcgaggtggtc
accgagggcatcctcgcccgccgcctgcaggatgacccggcgctggagggcgtggggctg
gtgatcttcgatgaattccacgagcgctcactggatgccgatctggcgctggcgctgacc
ctcaatggccgcgcactgctgcgcgacgagccaccgctcaaggtgctggtgatgtcggcc
acgctggaaggcgagcgcctctccgcgctgctggacgacgcgccggtggtgcgcagcgag
gggcgcatgttcccggtggatatccgctggggccgcccatggcaggccggcgagttcatc
gagccgcgcgtggtgcagacggttctgcaggcgctggccgacgagcccggcagcctgctg
gtgttcctgcccggccaggcggagattcgccgcgtcgccgagcagttgggcgaggccctg
gccggccgctccgatgtcctgctctgcccgctgcacggcgaactcgacctcgacgcccag
cgtgccgccatcgaacccgcgccggcgggcaagcgcaaggtggtgctggcgaccaacatc
gccgagaccagcctgaccatcgacggcgtgcgcgtcgtcgtggacgccgggctggcgcgg
gtaccgcgcttcgatccgggcagtggcatgacccgcctggaaacccagcgcatctcccgc
gcctccgccacccagcgcgccggccgtgccggacgtttggaaccgggcgcctgctaccgc
ctgtggtccgaggcgcagcacgatcaactgccggcctatggcgcggcggaaattctccag
gccgatctggccggcctcgccctgcagctggcgcgctggggtgtcgccccgcaggagctg
gcctggctcgatctgccgcccgccgccgcttatgcacaggcccaggacctgctggagcgc
ctcggcgcgctggcttcccgcgccggtggcggcagcctcacgccccacggtcaggccatg
gccgaagtgccggcgcacccgcgtattgcccatctgctgctgcgcggccatgcgctgggg
ctggggcagctggcctgcgatctggccgccttgctcggcgagcgcgacatcctgcgtggc
agcgacgccgacctgcatcaccgcatcgccttgctggccggcgagcagaacggcccgcgc
gccagccggggcgcggtgcagcgggtgcgccagctggcgcgacagttcaagggctacttg
cgcggcccggcccgcgagccggtggccgaccccgatcatccgcgctggttgggcggcctg
ctggcctttgcctacccggaccgcatcgcccgccagcgacgtgccggtggcggcgaatat
cgcctggccaacggccgcgcggcgctgttcggcgagccggatgcgctgatgaaggaagcc
tggctggtggtcgccgatctcggcagccgccagggccagcgcgaggagcgcatctacctg
gcggcggcgctggagccggggctgttcgagtcgatcctcgccgaacaggtcagtgtccat
gacgagttggagtgggacgagcgagaaggcgtgctgcgcgctgagcgccagcgcaaggtc
ggtgagctggtgctgtccaccgaggcgctgcccaacctcgacgccgaggcgcgcagccgc
gcgctactcgggctggtgcggcgcaaggggctggagctgctgccgtggacgccggagctg
cgccagtggcaggcgcgcatcgccttgctgcgccggctcgatctggaaggcaagggcgag
agcgagtggccggacgtcagcgacgccgcgctgctggttccgctggaagactggctgctg
ccctacctgggcaaggtctcgcggctgtcgcacttcgccaacctggagctgagcgggatt
ctccacgggctgctgccctggccgttgccgcagcggctggacgagctggcgccacgcgcg
ctgcaggtgccgtccggctcgactatccgcctggattacagcgagtttcccccggtgctc
gccgtgcgcctgcaggagctgttcggcctggccgacacgccgcgcattgcaggagggcgg
gtggcggtgaagctacacctgctgtcgccagcgcagcggccggtgcaggtgacccaggac
ctggccaacttctggcgcagcacctatgcggaagtgaagaaggacctgaaggggcgctat
ccgaagcattactggccagatgacccgctgatcgccgagccgacggcgcgggccaagccg
cgcaaggggtag
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