Pseudomonas denitrificans (nom. rej.): F1C79_29105
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Entry
F1C79_29105 CDS
T09478
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C79_29105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pden03019
]
F1C79_29105
Enzymes [BR:
pden01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1C79_29105
Messenger RNA biogenesis [BR:
pden03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C79_29105
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AroM
CMS1
Motif
Other DBs
NCBI-ProteinID:
QEY75358
UniProt:
A0A9X7N593
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All DBs
Position
6234989..6236371
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AA seq
460 aa
AA seq
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MTFANLGLIDPLLRALDGLGYQNPTAVQAQAIPAVLKGRDLLAAAQTGTGKTAGFALPLL
QKLLHEGHQVAANSIRALVLVPTRELAEQVHESFRAYGQHVPLRTAVAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQNALKFTQLQVLVLDEADRMLDLGFARELDEVFAALPRRR
QTLLFSATFSDAIRQMARTLLRDPLTIDVAPRNTAAKTVKQHLLTVDKKRKAELFLHLLR
EQGWSQALVFAKTRKGVDELVDLLQREGIRADSIHGDKPQPSRLRALARFKAGEVDFLIA
TDVAARGLDIEEMPLVVNFDLPIVPEDYVHRIGRTGRAGASGQAISLVCADEVQQLAAIE
TLIGQTLPRQEEDGFEAEHRVPVTAPGGQITKKPKKPKQPKVLEGKPGKVHLGSLLDDKP
QVKAVRKAPGFGLGGKPAAGKPASGKSSAGKPGGKGARRP
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgccaatctcggcctgatcgatcccctcctgcgcgccctcgacgggctcggc
taccagaacccgacggcggtgcaggcccaggccatcccggctgtgctcaaggggcgcgac
ctgctggccgccgcccagaccggcaccggcaagaccgccggcttcgccctgccgctgctg
cagaagctgctgcacgaaggccatcaggtagcggccaactcgatccgcgcgctggtgctg
gtgcccacccgcgagctggccgagcaggtgcacgagagtttccgcgcctatggccagcac
gtgccgttgcgcaccgccgtggcttacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggcgtcgacgtgctggtggccacgccaggccgcctgctcgatctgtaccgg
cagaacgcgctgaaattcacccagttgcaggtgctggtgctggacgaggccgaccgcatg
ctcgatctgggcttcgcccgcgaactggacgaagtcttcgccgcgctgccccggcgccgt
cagaccctgctgttctccgcgaccttctccgacgccatccgccagatggcccgcaccctg
ctgcgcgacccgctgaccatcgacgtggcaccgcgcaacacggcggcgaagacggtgaag
cagcacctgctcaccgtcgacaagaagcgcaaggccgagctgttcctgcacctgttgcgc
gaacagggctggagccaggcgctggtgttcgccaagacccgcaagggcgtcgacgaactg
gtcgacctgctgcagcgcgaaggcatccgcgccgactcgattcacggcgacaagccgcag
ccctcgcgcctgcgcgccctggcgcggttcaaggcgggcgaggtggacttccttatcgcc
accgacgtcgctgcgcgcggcctggacatcgaggagatgccgctggtggtcaacttcgac
ctgcccatcgtccccgaggactacgtgcaccgcatcggccggaccggccgtgccggcgcc
agcgggcaggcgatctcgctggtctgcgccgatgaagtgcaacagctggcggccatcgag
acgctgatcggccagaccctgccgcgccaggaggaagacggcttcgaggcggagcaccgg
gtacccgtcactgctccgggtggccagatcaccaagaagccgaagaagcccaagcaaccc
aaggtgctcgaaggcaagccgggcaaggtgcacctcggctcgctgctggacgacaagccg
caggtcaaggcggtgcgcaaggcgccgggcttcggcctgggcggtaaaccagccgctggc
aaacctgcctccggcaaatcgtccgccggaaagccgggcggcaagggcgctcgccggccc
tga
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