Pseudomonas denitrificans (nom. rej.): F1C79_30685
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Entry
F1C79_30685 CDS
T09478
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F1C79_30685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pden03021
]
F1C79_30685
Transcription machinery [BR:
pden03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F1C79_30685
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
HTH_28
Sigma70_ECF
PhyR_sigma-like
DUF8666
HTH_11
NirdL-like_HTH
GerE
Motif
Other DBs
NCBI-ProteinID:
QEY75638
UniProt:
A0A9X7R7F1
LinkDB
All DBs
Position
6594502..6595062
Genome browser
AA seq
186 aa
AA seq
DB search
MAGVAVSLLGRTQLADHDIHRLYADHHGWLQGWIRRKTGCSQRAADLAQDTFLRVLMTRA
KGVAVYLDQPRTYLATIARGLVIDQWRRQQLELAWLESLAAQPEAVQSSPEQLALILETL
HQVDAMLLRLPARVRRAFLLAQIDGWPYREIAGELGVSERMVKKYLAQAFLHCAVLEAEL
DGVLVE
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atggcaggtgtggcggtgtcgctattgggtcgtacacaactcgcggatcacgacatccac
cgcctctatgctgatcaccatggctggctgcagggctggattcggcgcaagaccggctgc
tcgcagcgcgccgccgacctcgcccaggacaccttcctgcgtgtgctcatgacgcgcgcc
aagggcgttgcggtgtacctcgaccagccgcgaacttacctcgcgaccattgcccgcggc
ctggtgatcgaccagtggcgccgccagcagctcgagctggcgtggctggaatccttggcc
gcgcagcccgaagcggtgcagtcgtcgcccgagcaactggcgctgatcctggaaaccctg
caccaggtggacgcgatgctgctgcgtctgcccgccagggtgcgccgggcctttctgctg
gcgcagatcgatggctggccgtaccgcgaaatcgccggggagctgggggtgtccgagcgc
atggtgaagaagtatctcgcccaggccttcctgcattgtgcggtactggaagccgagctg
gacggagtgctggtggagtga
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