Pseudomonas denitrificans (nom. rej.): F1C79_31190
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Entry
F1C79_31190 CDS
T09478
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pden
Pseudomonas denitrificans (nom. rej.)
Pathway
pden03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pden00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
F1C79_31190 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pden03400
]
F1C79_31190 (recD)
Enzymes [BR:
pden01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F1C79_31190 (recD)
DNA repair and recombination proteins [BR:
pden03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F1C79_31190 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
AAA_22
Helicase_RecD
SH3_13
UvrD-helicase
AAA_28
T2SSE
NTPase_1
AAA_25
SLFN-g3_helicase
HerA_C
nSTAND3
AAA_16
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QEY75731
UniProt:
A0A9X7N6X4
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All DBs
Position
6702855..6704879
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AA seq
674 aa
AA seq
DB search
MKSTAQMLELIGRWAERGWLRELDRAFAIFLVERAPDANPLLILAAALASHQLGRGHVCL
DLEATLADSRFALSLPPEGDSAKDAPELPGVLLDGFDLDAWRAVLSDPRLVGEGPGETPL
VLSGRRLYLRRYWQYEREVRAGIDQRLQQGDALRAGLPAAQLRQALDALFPKKTGAPADW
QKLACALVAGNAFGIVTGGPGTGKTTTVVKLLALLQSLALGEGGRPLRIRLAAPTGKAAA
RLNESIAGAVQRLDLAGLANGEAAREAIPTEVTTLHRLLGSRPDSRQFRHHAGNPLALEL
LVVDEASMVDLEMMASLLAALPPRARLILLGDKDQLASVEAGAVLGELCSRAREGHYRPV
TRDWLEAVTGEPIDPALLDTSGSDLDQAAAMLRHSHRFSADSGIGQLAEAVNAGDIPALR
QVWKAQHEDLARIAVDAQETRSLRDLVIDGGRGGDLFGPVGYAHYLRVVSGSRPADTADQ
AALDTWARKVLEAHGQFQLLCALRRGPWGVEGLNSLIGDLLQREGLIPSASGWFAGRPVL
VTRNDYGLGLMNGDIGITLALPQTADDGSVRWVARVAFPAGDGTDAIRWILPSRLQAVET
VFAMTVHKSQGSEFTHAALLLPDSLNPILTRELVYTGITRARKWFTLASAGRGWQVLEAA
TERRVQRASGLLGG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcaccgcccagatgcttgagctgatcggtcgctgggccgagcgcggctggctg
cgcgagctggaccgcgccttcgcgatcttcctggtcgagcgcgcgcccgacgccaatccg
ctgctgatcctcgccgccgcgctggccagccaccagctcggtcgcgggcatgtctgcctc
gacctggaagcgaccctggccgacagccgattcgccctgtccctgccgcccgaaggcgac
tcggccaaggacgccccggagctgcctggcgtactgctcgacggcttcgacctcgacgcc
tggcgtgccgtgctgagtgatccgcgactggtcggcgaaggccctggcgagacgccgttg
gtgctgtccggccgtcgtctgtatctgcgccgctactggcagtacgaacgcgaagtgcgc
gccggtatcgaccagcgtctgcagcagggcgatgcgttacgtgccgggttgcctgcggca
cagttgcgccaggcgctggatgcgctgttcccgaaaaaaaccggcgcgcccgcggactgg
cagaaacttgcctgcgcactggtcgccggcaacgctttcggcatcgtcaccggcggccct
ggcaccggcaagacgaccaccgtggtgaagctgttggccctgctgcaaagcctggcgctg
ggggagggcgggcgaccgctgcgcatccgccttgccgcgcccaccggcaaggccgccgcg
cgcttgaacgaatccatcgccggcgccgtgcagcgcctcgacctcgccgggctggccaat
ggcgaagccgcgcgcgaggcgatcccgacggaagtcaccacgctgcaccgcctgctcggc
agccggccggacagccgccagttccgccaccatgccggcaatccgctggcgctggagctg
ctggtggtggacgaagcctcgatggtcgacctggaaatgatggcctcgctgctcgccgcg
ctgccgccgcgcgcgcggctgatcctgctcggcgacaaggaccagttggcttcggtagaa
gccggcgcagtgctcggcgagctgtgcagccgcgcccgcgaaggtcattaccgcccggtc
acccgcgactggctggaagccgtgaccggcgagccgatcgaccctgcattgctggacacc
tccggcagcgacctcgatcaggccgcggcgatgctccgccacagtcaccgcttcagtgcc
gacagtggcatcggccagttggccgaggcggtcaacgccggcgatatcccggccctgcgc
caggtgtggaaggcgcagcacgaggacctcgcccgcatcgccgtggacgcccaggaaacc
cgcagcctgcgtgatctggtgatcgacggcggacgcggtggcgacctgttcggcccggtc
ggctacgcccattacctgcgcgtcgtcagcggttcgcgcccggcggacactgccgatcag
gctgcactggatacctgggccagaaaggtgctggaagcccacggccagttccagttgctc
tgcgcgttgcgccgcgggccctggggcgtggaagggttgaacagcctgatcggcgacctg
ctgcaacgcgaagggctgatcccctcggcgagcggctggttcgccgggcgaccggtgctg
gtcacccgcaacgactatggcctgggcctgatgaacggcgacatcggcatcaccctggcg
ctgccgcagacggccgacgatggctcggtgcgctgggtggcgcgcgtggccttcccggcg
ggcgacggtaccgacgccatccgctggatcctgcccagccgcctgcaggcggtggaaacc
gtgttcgccatgaccgtgcacaagtcccagggctcggagttcacccacgccgcgctgctg
ctgcccgacagcctcaaccccatcctcacccgcgagctggtctacacaggcatcacccgc
gcgcgcaaatggttcaccctggccagcgccgggcgcggctggcaggtgctggaggcagcg
acggaacgacgggtgcagagggccagcgggttgctcggcggctga
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