Peteryoungia desertarenae: FE840_011625
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Entry
FE840_011625 CDS
T07298
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pdes
Peteryoungia desertarenae
Pathway
pdes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE840_011625 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdes03019
]
FE840_011625 (rnr)
03016 Transfer RNA biogenesis [BR:
pdes03016
]
FE840_011625 (rnr)
Enzymes [BR:
pdes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FE840_011625 (rnr)
Messenger RNA biogenesis [BR:
pdes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FE840_011625 (rnr)
Transfer RNA biogenesis [BR:
pdes03016
]
Prokaryotic type
tRNA degradation factors
FE840_011625 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QLF70134
UniProt:
A0ABX6QNQ8
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All DBs
Position
complement(2394163..2396523)
Genome browser
AA seq
786 aa
AA seq
DB search
MNKKFRDPSEFPGSGNGKSRRAEGAAKARASNPAALIHGEVPPRDVLMQFITDNPDRASK
REIAKAFGLKGEQRVELKQALKDLENDGLVQKSRKSLTRPGALPPVTVLDITTRDKDGEL
IGRPAEWPEEAGAAPAVLIRQSSSDRSKGKTPVGGLGDRVLAKIFANKDRSGPAYTARVI
KILDRHVGAVMGVVRLMPDGGARLMPIDRRGEEMQIDATDLGEAKDGDLVEVEVGRAARF
GLTRAKVLTVVGSVASEKAISMIAIHAHGIPHIFPQSVISEAEAAKPASMSHREDWRDLP
LVTIDPHDAKDHDDAVYAELDPSPDNPDGVIVTVAIADVSYYVRPKSALDREALKRGNSV
YFPDRVVPMLPERISNDLCSLREGVDRPALAVRMVFSHEGRKASHTFHRIMMKSAAKLSY
QQAQAAIDGKTDEKTGPLLEPILKPLWHAYAVMKRGRDRRQPLELDMPERKIILKEDGTV
DRVHVPERLDAHKLIEEMMIQANVSAAETLEKKRQPLIYRIHDAPSLAKQEVLREFLGTL
GMSLVKGGNMRSNSFNGILAKAQDTPHQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYA
HFTSPIRRYADLIVHRALVGSLGLGEGGITPDEEASLEDISAEISTFERRAMAAERDTIN
RLIAHHLAGRIGDEFDGQVSGVTKSGLFISLPQFGADGFIPVSTLGRDYYIYDEAHQALT
GEKSGLGYQLGDTVEVRLVEAVPLAGALRFEMLSGGRKMPMGTRSFHKASRRGSKLPGTR
PKRGRR
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaagaaattccgcgacccctccgaatttcccggctccggcaacggcaagagccgg
cgtgcggaaggcgcggccaaggcgagagccagcaatcccgccgcgctgatccatggcgaa
gtgccgccgcgcgacgttctcatgcagttcatcaccgacaatcccgaccgcgcctcaaag
cgcgagatcgccaaggccttcggcctgaagggcgagcagcgggtggaactcaagcaggcg
ctgaaggatctggaaaatgacgggctggtgcagaagagccgcaagtcgctgacgcggccg
ggcgcgctgccgccggtcaccgtgctcgacatcaccacccgcgacaaggatggcgaactg
atcggccgtcccgcagaatggcccgaggaagccggtgcggcaccggccgttttgatccgc
cagtcgagctccgaccgttccaagggcaagacgccggttggcgggctgggcgatcgggtg
ctggccaagatcttcgccaacaaggatcgctccggcccggcctatacggcgcgggttatc
aagatcctcgaccgccatgtcggcgccgtcatgggtgtcgtgcggctgatgcccgatggt
ggcgcgcgcctaatgccgatcgatcgtcgcggcgaggaaatgcagatcgacgcgaccgat
ctcggagaggccaaggatggcgatctggtcgaggtcgaagtcggtcgtgccgcccgcttc
ggtctgacccgggccaaggtgctgacagtcgtcggctcggtcgcatcggaaaaggcgatc
tcgatgatcgccatccacgcgcatggcattccgcatatcttcccgcagtcggtgatttcg
gaagccgaggcggccaagcccgcctcgatgtcgcatcgcgaggactggcgtgacctgccg
cttgttaccatcgacccgcatgatgccaaggatcatgacgacgccgtttatgccgaactc
gacccctcgcccgacaatcctgatggcgtaatcgtcacggtggccatcgccgacgtttcc
tactatgtcaggccgaaatcggcgctcgaccgcgaggcgctgaagcgcggcaattccgtc
tacttccccgatcgcgtcgtccccatgctgcccgagcggatctccaatgatctctgctcg
ctgcgcgagggtgtcgatcgtccggcgcttgccgtgcgcatggtcttctcgcatgaagga
cgcaaggcgagccacaccttccatcggatcatgatgaagagtgcggccaaactctcttac
cagcaggcccaagccgcgatcgacggcaagaccgacgagaagaccggaccgcttctcgaa
ccgatccttaaacccctctggcatgcctacgccgtgatgaagcgcggtcgcgaccggcgc
cagccgctcgaactcgacatgcctgagcgcaagatcatcctcaaggaggacggcacggtc
gatcgcgtgcatgttcccgaacgcctcgatgcgcacaagctgatcgaggagatgatgatc
caggcgaatgtctcggctgccgagacattggagaagaagcggcagccgctgatctaccgc
atccatgacgcgccgagcctagccaagcaggaggtgctgcgcgagttcctcggcacgctg
ggcatgtccttggtcaagggcggcaatatgcggtccaactcgttcaacggcattctcgcc
aaggcgcaagacacgccgcatcagactatggtcaacgagatggtgctgcgcagccagagc
caggcgatctatagtccggagaatatcggccatttcggcctcaacctgatgaagtatgcg
catttcacctcgccgatccggcgatatgccgacctgatcgtgcatcgggctctggtaggc
tcgctgggcttgggcgaaggcgggattacgcctgacgaggaggcgagcctcgaggatatc
tccgccgagatctcgaccttcgagcgccgtgcgatggcagccgagcgagatacgatcaac
cggttgatcgcgcaccatcttgccggtcgcatcggcgacgaattcgacggccaggtgtct
ggtgtcaccaagtcgggcctgttcatcagcctgccgcaatttggcgcagatggctttatc
ccggtttccacgctgggccgcgactactatatctacgacgaagcgcatcaggccctgacg
ggtgagaagtccgggctaggataccagctcggtgataccgtcgaggttcggctggtggag
gcggtgccgctcgccggcgcgctgcgcttcgaaatgctgagcgggggacgcaagatgccc
atgggcacgcgttccttccacaaggcaagtcgacgaggctccaagctgcccgggacacgc
cccaaacgaggtcgacgctaa
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