Pseudomonas defluvii: QEP73_07340
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Entry
QEP73_07340 CDS
T10501
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdeu Pseudomonas defluvii
Pathway
pdeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEP73_07340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdeu03019
]
QEP73_07340
Enzymes [BR:
pdeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QEP73_07340
Messenger RNA biogenesis [BR:
pdeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QEP73_07340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WJM97931
LinkDB
All DBs
Position
complement(1601793..1603688)
Genome browser
AA seq
631 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKTYARDLNFISACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVETLVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPAGHKRALL
AHLITVGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKAGTV
RVMVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERVTRQKIADGDLMGFDASAIEAEKPETRERPQNTPRTGRGQRADGTNTGSGGRKD
KGKDKGKEKDKAGEKSAEKAAGGRQERKPRDKKPRPAQAAGQSAIPPVPANRDPEEFLDD
EVDNFGNRADYVSPYQNKGGQGRNRRPGAPANSNGGAAQPRGGQGRSNNPRSGGAANAGA
NGEKRGGARNGAGSGGRDGQPRRDGANRNRRPAREESSRQEPAVRNPREGQPQPKIIHKE
SKVDRFPTAEQLEQLPSRPRGEKPALLTRNR
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctctagtccgcgctatcgaggctgcgggc
tatacccagcccactccggtgcaacagcgggcgattcccgccgtgttgcaaggtcgcgac
ctgatggtggcggcgcagacaggtactggcaaaaccggcggtttcgcactgccaatcctt
gaacgcctgtttcccggcggccaccccgacaaatcccagcgtcacggcccgcgccaacca
cgtgttctggtgctgacgccaacccgtgaactggccgcacaggtacacgacagcttcaaa
acctatgcccgtgacctgaatttcatcagcgcgtgcatcttcggtggtgttggtatgaac
ccgcaggtgcaagccatggcccgcggtgtcgatgtactggtggcctgccctggccgcctg
ctggacctcgccggtcaaggcagcgtcgacctgtcgcacgtcgaaaccctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccacgatgtgaagaaggtcctggcccgc
ttgccggccaagcgccagaacctgctattctcggccaccttctccaaagacatcaccgac
ctcgccgacaagctcctgcacaacccggagcgtatcgaggtcaccccgccgaacactacc
gtcgagcggatcgagcagcgggtctatcgcctgccggccggccacaagcgtgcgctgctg
gcccacttgatcaccgtcggcgcctgggaacaggtactggtcttcacccgcaccaagcat
ggcgccaaccgcctggccgagtacctggagaagcacggcctgaccgccgccgccatccat
ggcaacaagagccagaatgcccgcaccaaagccttggccgacttcaaggccggcactgta
cgggtcatggtcgccaccgacatcgccgcgcgcggcctggacatcgatcaactgcctcac
gtagtcaacttcgagctgccgaacgttgaagaggactacgtacaccgcatcggccgtacc
ggtcgtgctggtcgctcgggcgaggccatctcgctggtcgcacccgacgaagagaaactg
ctcaagagcatcgagcgcgttacccgccagaaaatcgccgacggcgacctgatgggcttt
gatgcttcggccattgaggccgagaaacccgaaacccgcgagcgtccacaaaacacccca
cgcactggccgtggccagcgtgccgatggcaccaacaccggcagcggtggccgcaaggac
aagggtaaggataaaggcaaggaaaaggacaaggccggcgagaagtccgctgaaaaggcc
gctggtggacgccaggaacgcaagccacgcgacaagaaaccgcgcccggctcaagccgct
ggccaatcggctattcctccagtgcccgccaaccgcgatccggaagaattcctggacgac
gaagtcgataattttggcaaccgtgccgactacgtcagcccgtaccagaacaagggtggc
cagggccgcaaccgtcgcccaggcgctccagccaacagcaacggcggggctgcccagcca
cgcggtggccagggccgtagcaacaaccctcgtagcggtggtgcagccaatgcaggcgcc
aacggcgagaagcgtggcggtgcacgcaacggagcaggctcgggtggccgtgacggccag
ccacgccgtgacggtgccaaccgcaaccgtcgccctgcccgcgaggagtcttcgcgccag
gaaccggccgtacgcaatcctcgtgaaggtcagccgcaaccgaagatcatccacaaggaa
tccaaagtggatcgcttcccgaccgccgagcagttggaacaactgccaagccgtccacgt
ggcgaaaaaccggcgctgctgacgcgtaaccgctga
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