Pseudomonas defluvii: QEP73_10815
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Entry
QEP73_10815 CDS
T10501
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
pdeu Pseudomonas defluvii
Brite
KEGG Orthology (KO) [BR:
pdeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdeu03009
]
QEP73_10815 (rimO)
Enzymes [BR:
pdeu01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
QEP73_10815 (rimO)
Ribosome biogenesis [BR:
pdeu03009
]
Prokaryotic type
ribosomal protein modification factors
QEP73_10815 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
TRAM
YajR_YAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
WJM98593
LinkDB
All DBs
Position
complement(2372394..2373731)
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AA seq
445 aa
AA seq
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MSTTPTPTTPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYQDADVVVVNTCGFIDS
AKAESLEVIGEAIAENGKVIVTGCMGVEEGAIRDVHPSVLAVTGPQQYEQVVNAVHEVIP
PKQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGEVLSE
AERLVKAGVKELLVISQDTSAYGVDVKYKTDFWNGRPVKTRMLELCEALSSLGVWVRLHY
VYPYPNVDDVIPLMAEGKILPYLDIPFQHASPKVLKSMKRPAFEDKTLARIKKWREQCPE
LIIRSTFIVGFPGETEEDFQYLLDWLSEAQLDRVGCFQYSPVEGAPANDLGLEVVPDDVK
QDRWDRFMAHQQQISAARLQLRVGKEIEVLIDEVDEQGAIGRSFFDAPEIDGVVYVESGR
DLKPGDKVLCRVTEADEYDLWAETL
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacccctacgcccaccacgcccaaggttggctttgtttccctgggttgcccc
aaggccctggtcgattccgagcgcatcctgacccaactgcgcatggaaggctacgaagtc
gtgcccacctatcaggatgccgatgtggtagtggtcaacacctgtggtttcatcgattcg
gccaaggccgagtcgctggaagtgatcggtgaagccattgccgaaaacggcaaggtgatc
gtcaccggctgcatgggtgtcgaagaaggcgccattcgcgacgtacacccaagcgtactg
gccgtgaccggtccgcaacaatatgaacaagtggtcaacgccgtccacgaagtgattccg
cccaagcaggaccacaacccgttgatcgacctggtgccaccacaaggcatcaaactgacg
ccccgccactacgcctacctgaagatttccgaaggctgcaaccacagctgcagcttctgc
atcatcccgtcgatgcgtggcaagctggtcagccgcccggtgggcgaagtgctgagcgag
gcagagcgcctggtcaaggccggcgtcaaagagctgctggtgatctctcaggacaccagc
gcctacggcgtcgacgtcaagtacaaaaccgatttctggaacggtcgcccggtcaagacc
cgcatgctcgaactgtgcgaagcactgagcagccttggcgtctgggtgcgcttgcactac
gtctacccgtatccaaacgtcgacgacgtgatcccactgatggccgagggcaaaatcctg
ccgtacctggacattccgttccagcacgccagcccgaaagtgctcaaatcgatgaagcgg
ccggccttcgaagacaagaccctggcacgcatcaagaaatggcgcgagcagtgcccagag
ctgattattcgctcgaccttcatcgttggcttcccgggtgaaaccgaggaagacttccag
tacctgctcgactggctcagcgaggcacagcttgaccgtgtcggctgcttccagtactcg
cccgtcgaaggcgcaccggccaatgacctgggccttgaagtcgtaccagacgacgtcaag
caggatcgctgggaccgcttcatggcccaccaacagcaaatcagtgccgcacgcctgcaa
ttgcgagttggcaaggaaatcgaagtgctcatcgatgaagtcgacgagcaaggcgccatt
ggccgcagtttcttcgatgcgccagagatcgatggtgtggtctatgtcgaaagcggccgc
gacctcaagccaggtgacaaggtgctgtgccgcgtaaccgaagccgacgaatacgatctg
tgggccgaaaccctctga
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