Pseudomonas defluvii: QEP73_11445
Help
Entry
QEP73_11445 CDS
T10501
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pdeu Pseudomonas defluvii
Brite
Enzymes [BR:
pdeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QEP73_11445 (hrpA)
Messenger RNA biogenesis [BR:
pdeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QEP73_11445 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WJM98711
LinkDB
All DBs
Position
2506816..2510727
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQNPAIDQLLRNLDHAMIAERHRLRRQLHELRKHPDEAKLAQWVEKVQASFARVTARK
QSVPLIRYDDSLPIAAKRDEIKKVLAEHQVLIIAGETGSGKTTQLPKICLELGRGQHGLI
AHTQPRRIAARSVATRVAEELGTPLGALVGYQVRFEDQSDANTLVKLMTDGILLAETQHD
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFNDAP
IIEVSGRTYPVETWYRPLTSEQDEEGNRVEDDLTVDQAILATLDEIAAHERSEGKHPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS
EEDFNARPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELS
AVNRENQLTPLGRQLARLPVDPRLGRMLLEGAKQGSLQEVLIVASALSVQDPRERPPERQ
QAADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDAH
RQLGLICRDLQLSINKEPADYPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAY
EQITLYGLIIVGRRPVHFGPIDPLMSRELFIREALVGGEIQSRAKCLTANTRLLEQLDEL
EAKARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTAAQYPDTLRLGDLSLALSYHFEPNHPRDGVTLRVPAPLLPNLPGERLEWLVPGLL
EAKCIALVRNLPKATRKNFVPVPDFVKAALQRMSFGVGSLPHALGAELLRMTGARVSDEA
WSEAAEQVDSHLKMNLEVVDAQGKFLGEGRDLAELTSRFVAASQAALAVPQTAQSQQPVE
AKGFAKVAQSAQQKIAGLSLTVYPALVEEGGTVKEGRFSTAAEAEYQHRRGLQRLLLQQL
AEPAKYLRGKLPGLTELGLLYRELGRIEALVEDILLASLDSCILEGEASLPRDGAALASL
AERKRGQWAEHAERLARLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKQQTANLVYPGF
VRETPSLWLKELPRYLKAIELRLEKLPAQVQKDRVWSGELSNLWAQFKARADKHAQEGKR
DEQLVLYRWWIEEYRVSLFAQQLGTKVPISDKRLSKQWGQVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccagaatcccgctatcgatcaactgttgagaaaccttgatcacgccatgatc
gccgagcgtcatcgactgcgtcggcaattgcacgaactgcgcaagcaccctgatgaagcc
aaactcgcccagtgggtcgagaaggtgcaggcgtcctttgcccgggtgacggcgcgcaag
caaagcgtgccgttgattcgctacgacgacagcctgccgattgccgccaagcgcgatgag
atcaagaaggtcctggccgagcatcaggtactgatcattgccggcgagacggggtcgggc
aagaccacccaattgccgaagatctgcctggagctgggccgcggccagcatggcctgatc
gcccacacccagccacggcggattgccgcccgcagtgttgcgacgcgggttgccgaagag
ctgggtacgccactgggagcgctggtgggctaccaggtgcgcttcgaagaccagagcgat
gccaacaccctggtcaagctgatgacggacggtatcctgctggccgaaacccagcacgac
cgttttctcgaacgctatgacacgatcattgtcgacgaagcgcacgagcgcagcctgaac
atcgacttcctgctcggttacctcaagaccctgctgcctcgtcgcccggacctgaagctg
atcatcacttcggcgaccatcgacctggagcgcttctccaagcacttcaatgatgcgccg
atcatcgaagtctcggggcgtacctacccggtggagacctggtatcgaccgctgaccagc
gagcaggatgaagagggcaatcgggttgaagatgacctgaccgtggatcaggcgattctc
gccaccctcgacgagatcgccgcccatgagcgcagcgaaggcaagcacccgggtgatgtg
ctggtgttcctgcccggtgagcgggaaatccgcgatgcggctgaaatgctgcgcaaggcc
cagctcaagcacaccgagatcctgccgttgtacgccaggctttcaccggccgaacagcag
cgaatcttccagtcccaccccgggcggcgcgtcgtgctggcaaccaacgttgctgaaact
tcgctgacggtgccgggcattcgctacgtgatcgacagtggtacggcgcggatcagccgt
tacagttaccgggccaaggtgcagcggctgccgatcgaggccgtatcccaggccagcgcc
aaccagcgtaaaggtcgctgcggtcgggtcgagccaggtatttgcgtgcgtctgtacagt
gaagaggatttcaacgcccgccctgcgtttaccgatcctgagatcctgcgcaccaacctt
gccgcggtgatcctgcagatgctgcatttgcgcctgggcgcgattgacgcattcccgttc
atcgagccgcctgatggtaaggccatcagcgacggcttcaacctgctgcaagagctctct
gcggtgaaccgcgagaaccagctgacgccgctgggccggcaattggcgcggcttccggtc
gacccgcggctgggccgcatgctgcttgaaggcgcgaagcaggggagcctgcaggaagtg
ctgattgttgccagtgcactgtctgtacaggaccctcgcgagcgtcctccggagcgtcag
caggctgccgatcaggctcatgcccagtggaaggatgtcgactccgatttcgcggcactg
gtcaatctctggcgcggtttcgaggagcagcgccaggcgctgaccgccagcccattgcgc
aactggtgccggaagaacttcctcaattacctgcgcttgcgtgagtggcgcgatgcgcac
cggcagttggggctgatttgccgtgacctgcagttgagcatcaacaaggagcctgccgac
tacccgaaattgcacaaggcggtgctctccggcctgctcagccagatcgggcagaaaacc
gaagacggcgactacctcggcgctcgccagcggcgcttctgggtacacccgtcttcgggc
ctgggcaagaagcgcccgcaatggctgatgactgccgaattggtcgaaaccaccaagctc
tatgcgcggatggtcgccaagatcgaaccagactggatcgaaccgctggccgggcacctg
gtcaagaagaaccacttcgagccgcactgggaaaagaagcgcggccaggtagtggcctat
gagcagatcaccctgtatgggttgattatcgtcggtcgacgcccggtgcatttcggcccg
atcgaccctctgatgtcacgcgaactgttcatccgtgaagcgctggtgggtggtgagata
cagtcacgggccaagtgcctgacggccaacacgcgcttgcttgagcaactcgacgagctg
gaagccaaggcacgtcgacgcgacattcttgccgatgaagaaaccctttacgccttctat
gaggcgcggctgcccgcggagattcatcagaccgcaacgttcgacagctggtaccgggtc
aacagccagaaagacccgcagttgttgatcatgcgcgaggaagatgtgctggcccgtgag
gccagtgaagtgaccgctgcccagtaccccgataccctgcgcttgggtgacctgagcctg
gcattgagttatcacttcgagcctaatcacccgcgtgatggtgtcaccctgcgcgtaccg
gcgccgctgttgccgaacctgccgggcgagcgcctggagtggctggtgcctgggttgctg
gaagccaagtgcattgcgctggtacgcaacctgcccaaggcaacccgcaagaactttgtg
cccgtaccggacttcgtcaaggctgccttgcagcggatgagttttggtgtcggctcgttg
ccccacgcattgggcgcggagctgttgcgcatgaccggtgcgcgggtcagcgatgaagcc
tggagtgaagctgccgagcaagtggacagccacttgaaaatgaacctggaggtggtcgat
gcccagggcaagttcctgggcgaaggccgtgacctggcggagctgacttcacgtttcgtc
gccgcaagccaggcggcactggccgtaccgcaaacggcacagagccagcagccggtggag
gccaagggctttgccaaggttgcgcaaagtgcccagcagaagatcgccggcctgtcgttg
acggtgtacccggcgctggtggaagagggcgggacggtcaaggaggggcggttctcgaca
gccgccgaagccgaataccagcaccgtcgcggtttgcagcggctgttgctgcaacagttg
gccgagccggccaagtacctgcgtggcaagttgccggggctgaccgagttggggctgctg
taccgcgaattgggacggattgaggcactggtcgaggacattctgctggccagtctcgac
agctgcatcctcgagggtgaggccagcctgccgcgtgacggtgctgcactggcgtcactg
gccgagcgcaaacgtggccagtgggccgagcatgccgagcgtctggcgcgtctgacgctg
gacatcctcaagctctggcatggcttgcagaagcgcttcaagggcaagattgacctggcc
caggctgtggcgttgaacgacatcaagcagcaaacggccaatctggtgtacccggggttt
gttcgggaaacaccgtcgctctggctcaaggagctgccgcgctacctcaaggcgattgaa
ctgcgcctggaaaaactgcccgcgcaggtacagaaggatcgtgtctggagcggtgagctc
agcaacctctgggcacagttcaaggcccgcgccgacaagcatgcccaggaaggcaagcgt
gacgagcagttggtcctgtaccgctggtggatcgaagagtaccgggtttcactgtttgcc
caacaactgggcaccaaggtgccgatttccgataagcgcttgagcaagcagtgggggcaa
gtggaagcctaa
DBGET
integrated database retrieval system
