Pseudomonas defluvii: QEP73_22100
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Entry
QEP73_22100 CDS
T10501
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pdeu Pseudomonas defluvii
Pathway
pdeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEP73_22100 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdeu03019
]
QEP73_22100 (rne)
03009 Ribosome biogenesis [BR:
pdeu03009
]
QEP73_22100 (rne)
Enzymes [BR:
pdeu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QEP73_22100 (rne)
Messenger RNA biogenesis [BR:
pdeu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QEP73_22100 (rne)
Ribosome biogenesis [BR:
pdeu03009
]
Prokaryotic type
rRNA processing factors
QEP73_22100 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
WJM96204
LinkDB
All DBs
Position
4840519..4843641
Genome browser
AA seq
1040 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDNPEALSGQSSYEIAATETEEVQPVAATRTLVRQEAAVKTAPARANAPVPAAP
EQPAAPVHVAPEPSLFKGLVKSLVSLFASKETPAAAPVVTEKPAAERPQRNEERRSGRQQ
SRSRNGRRDEERKPREERAERAPREERQPREAREETPAREERAPRPPREERQPRPPREER
RRDERVRELREPLDATAPAAAAAPAVREERPERAPREERAPREERAPREERAPREERAPR
EERAPREERQPRPPREERQPRPAEVAAEATEEQLPNEELLQEEAEGADGERPRRRSRGQR
RRSNRRERQRDANGNVVEGSEEAAEESSAEQAAGVVVAAGAAISAEAEAQANQQAENATA
AVEARVAATEVVAEAAPAVEAAPVEAAPAVVEAAVVEAAVVDIAPAAEQPAAPVEAVEPG
AAPVVEVTPAPAEVVVEAPIAAAKEAEPAVEAPAPVVVEAPAAEPVVAAEAPALPLPSSG
RAPNDPREVRRRKREAEAAAAAAAAKAAKAAEVPAAAVEAPVEAPAQAEQPSTEAVVTAE
EVTEQSPKALETAEEPKPLA
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgctctggtggat
ggccaacgtctctacgacctggatatcgagtccggcgctcgcgagcagaagaaagccaac
atctataaaggccggattacccggatcgaacccagcctcgaagccgcatttgtcgacttc
ggttctgagcgccatggcttcctgccactgaaagaaatttcccgcgaatacttcaagaag
gccccagaaggccgcgtcaacatcaaggaagtattgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagagcgtggcaacaagggcgccgccctgaccaccttcatcagcctg
gctggccgctacctggtactgatgccgaacaacccgcgtgccggtggcatctcgcgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctcaatggcctggtcgcccctgcc
gacatgggcctgatcgttcgcactgccggcctgggccgcagcagcgaagagatgcaatgg
gacctggactacctgctgcagctctggactgcaatcaaggaagcctccctggaccgcgcg
gctcctttcctgatctaccaggaaagcaatgtcatcattcgtgccatccgcgactacctg
cgccaggacatcggcgaagtactgatcgacagcatcgacgcccaggaagaagccctgacc
ttcatccgtcaggtgatgccgcagtacgccagcaagatcaagctctacgaagacagcgtc
ccgctgttcaatcgtttccagatcgaaagccagatcgaaaccgccttccagcgcgtggtc
gaactgccgtcgggcggctcgatcgtcatcgatccaaccgaagccctggtctccatcgac
atcaactcggcgcgcgccaccaaaggtagcgacatcgaggagaccgcgctgcagaccaac
ctggaagcagccgaagaaatcgctcgccagctgcgcctgcgcgacattggtggcctgatc
gtcatcgacttcatcgacatgacgccggcgaaaaaccagcgcgccgtcgaagagaaggta
cgtgaatgcctggaagccgaccgcgcacgcgttcaggttggccgcatctcgcgtttcggc
ctgctggaaatgtcccgccaacgcctgcgcccatctctgggcgagagcagcggcatcgtc
tgcccacgctgcagcggcaccggcatcatccgtgacgtcgaatccctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaggaccgcactgctgaagtgcgcgcccaagtg
ccgattccggtcgcagcgttcctgctcaacgaaaaacgcaactcgatcaccaaaatcgaa
ctgcgtacccgtgcacgcatcgtgatcctgccaaatgatcaccttgaaaccccgcacttc
gaagtgcagcgcctgcgcgatgacaatccagaagcgctgagcggccagtccagctacgaa
atcgccgccaccgagaccgaagaagtccagccagttgccgcgactcgcaccctggttcgc
caggaagctgcggtcaagactgcaccggcccgcgccaatgcaccggtacctgccgcacca
gaacagcctgccgcccctgtgcacgttgcgccagagccaagcctattcaaaggcctggtc
aagtcgctggtcagcctgttcgccagcaaggaaacgcctgccgccgcaccggttgtcacc
gagaagccggccgccgaacgcccacagcgcaacgaagagcgccgtagcggtcgtcagcag
agccgcagccgcaacggtcgtcgcgacgaagagcgcaagccacgtgaagaacgcgccgag
cgtgccccacgcgaagagcgtcagccgcgcgaagcccgtgaagaaaccccggcccgcgaa
gaacgcgcaccacgcccgccgcgcgaagagcgccaaccacgcccaccgcgtgaagagcgt
cgccgtgacgaacgcgttcgtgaactgcgcgagcccctggatgccactgcaccggctgct
gccgccgcaccggccgtacgcgaagagcgtcctgagcgcgccccccgtgaagaacgcgct
ccacgcgaagagcgtgcaccgcgtgaagaacgcgcgccacgtgaagagcgtgcaccacgc
gaagaacgtgcaccacgcgaagagcgccaaccgcgcccaccacgtgaagagcgtcagcca
cgtcctgccgaggttgctgccgaagcgaccgaagagcaactgccaaacgaagagctgctg
caagaagaagccgaaggcgccgatggcgagcgcccacgtcgccgctctcgcggtcagcgt
cgccgtagcaaccgtcgtgaacgtcaacgtgatgccaatggcaacgtcgttgaaggcagc
gaagaagcggctgaagagtcgagtgccgaacaggcggcgggcgttgtcgttgctgcaggc
gcagccatcagcgctgaagccgaagcacaggccaaccagcaagctgaaaacgctaccgct
gctgtcgaagcacgtgtagccgctaccgaggtcgtcgcagaggctgcacctgcagtcgaa
gcagcaccggtagaagccgcacctgcggtagttgaagctgcagtagttgaagctgccgtg
gtcgacattgcccctgccgccgaacagcctgcggcacctgtcgaagccgttgaacccggc
gcggctccggtggtggaagtcaccccagccccagctgaagttgtggtcgaggccccgatc
gctgctgccaaggaagccgagcctgcagtcgaagcacctgctccggttgtggttgaagca
cccgctgccgagccggtagtcgccgccgaagcacctgccctgccgctaccaagcagtggc
cgcgcaccaaacgacccacgcgaagtgcgtcgtcgcaagcgcgaagctgaagctgctgca
gccgcggcagccgctaaagccgctaaagccgcagaggtacctgctgccgccgtcgaggca
ccagtagaagccccagcacaagccgagcaaccgtccaccgaagctgtcgtaacggcagaa
gaagtgaccgagcaaagcccaaaggccctggaaaccgcagaagagcctaaaccgctcgcc
tga
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