Pseudomonas defluvii: QEP73_23130
Help
Entry
QEP73_23130 CDS
T10501
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pdeu Pseudomonas defluvii
Brite
KEGG Orthology (KO) [BR:
pdeu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pdeu03009
]
QEP73_23130 (rlmD)
Enzymes [BR:
pdeu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QEP73_23130 (rlmD)
Ribosome biogenesis [BR:
pdeu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QEP73_23130 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
MTS
Methyltr_RsmB-F
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_23
Methyltransf_15
PCMT
Methyltransf_4
Methyltransf_12
Ubie_methyltran
TPMT
DREV
PrmA
Motif
Other DBs
NCBI-ProteinID:
WJM96389
LinkDB
All DBs
Position
complement(5061051..5062409)
Genome browser
AA seq
452 aa
AA seq
DB search
MSKNKRNSGLRFQPAGGSRTPQVPVGKKQRLTLERLSGDGRGIAFVEGRTWFVSGALAGE
EVEARVLSAHGKVVEARLERVFSASPLRRTAPCAHAARCGGCNLQHLPHAEQLALKQRLL
AEQLQRVAGVEPEHWAPPLSGPEFGYRRRARVAVRWDARAKHLEVGFRAEASQDIVAIDE
CPVLVDALQPIMQQLPAVLRGLRKPQVIGHVELFSGTALALLLRHTAPLAEGDLQQLQAF
CNDAGVQLWLQGEGEPTAVDPSQALGFVLEPWGLELAYRPGDFVQVNAQVNTAMIEQALA
WLAPQNDERVLDLFCGLGNFALPLARQAREVVAVEGVQTMVERAAENARSNNLHNVRFFQ
ADLSQPLAGMEWAGEGFSAVLLDPPRDGALEVVRNIANLGAKRLVYVSCNPATLARDTQA
LLGQGYRLKCAGILDMFPQTAHVEAMALFEAG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaataaacgtaatagcggcctgcgctttcagccggccggcggcagccgtacc
ccacaggttcctgttggcaagaagcagcgcctgacactcgaacgcttgtccggcgacggc
cgtggcatcgcatttgttgaggggcgtacctggtttgtcagcggtgcgctggcgggtgaa
gaggtcgaagcgcgggtgctcagcgcccatggcaaggtggtcgaggcacgtctggagcgt
gtattcagcgccagcccgctgcggcgtacggccccttgcgcgcatgcggcccgttgcggt
ggctgcaacctgcagcacctgccccatgccgagcagttggcgctcaagcagcgcctgctc
gccgaacagttgcagcgtgtagcgggcgttgagcctgagcactgggcaccgccgctgagt
gggcctgagttcggctaccggcggcgtgcgcgcgttgcagtgcgttgggatgcccgcgcc
aaacacctggaggttggtttccgtgccgaggccagtcaggatatcgttgcgatcgatgaa
tgtccggtgctggtcgacgccctgcagccgatcatgcagcagttgcctgccgtgttgcgc
ggcttgcgcaaacctcaagtgatcggccatgtcgaattgttcagcggtacggcgctggcg
ctgttgctgcgccataccgctccgctggcggagggcgatctacagcaactgcaggcgttc
tgcaacgacgctggcgtgcaactctggttgcagggagagggtgagccgaccgcggttgat
ccgagccaggcgttgggttttgttcttgagccgtggggcctggagctggcttaccgccca
ggtgacttcgttcaggtcaatgcccaggtcaataccgcgatgatcgaacaggcactggcc
tggttggcaccgcagaatgacgagcgtgtgcttgacctgttctgcggcctgggtaacttc
gctttgccactcgcccgacaagcccgcgaagtcgtggcggtggaaggggtgcagaccatg
gtcgagcgtgccgcggaaaacgcccgcagtaataatttgcataacgtgcgcttttttcag
gccgatttgtcccaacctctggcaggcatggagtgggccggtgagggcttttctgcggta
ctcttggatccaccacgggacggtgcgcttgaggtggtcagaaatattgcgaacctgggt
gccaagcgtctggtctatgtttcgtgtaacccggccactctggcgcgcgatacccaagcg
ttgctcgggcagggttaccggttaaagtgtgccgggatactcgacatgtttcctcagacg
gcccatgtcgaggccatggcgttattcgaggcgggctag
DBGET
integrated database retrieval system
