Clostridioides difficile 630Derm: CD630DERM_00670
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Entry
CD630DERM_00670 CDS
T03785
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdf
Clostridioides difficile 630Derm
Pathway
pdf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CD630DERM_00670 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdf03021
]
CD630DERM_00670 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdf03400
]
CD630DERM_00670 (rpoC)
Enzymes [BR:
pdf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CD630DERM_00670 (rpoC)
Transcription machinery [BR:
pdf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CD630DERM_00670 (rpoC)
DNA repair and recombination proteins [BR:
pdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CD630DERM_00670 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
CEJ96571
UniProt:
A0A031WA07
LinkDB
All DBs
Position
1:99213..102698
Genome browser
AA seq
1161 aa
AA seq
DB search
MFELNNFESIKIALASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYRRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPMSHIWYFKGIPSRMGLLLDM
SPRSLEKILYFASYVVVDPGETGLNEKQLLTEKEYRTALEKYGYTFTVGMGAEAVKTLLQ
NIDLEQQSKDLRAELKDSTGQKKVRTIRRLEVVEAFKKSGNKPEWMILDAIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKFYQCGLPKK
MALELFKPFVMDKLVKEGYAHNIKSAKSIVEKVKPEVWDVLEDVIKSHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLSVNNIL
APKDGSPITTPSQDMVLGCYYLTIEAQDGAKGTGMVFKDFNELLLAYYNKSVHLHALVKL
KVTLEDGRSSLVESTVGRFIFNENIPQDLGFVDRKENPFALEVDFLADKKSLGKIIDKCF
RKHGNTETAELLDYIKALGFKYSTLGGITVAVDDMSVPEEKKVFIAEAEAKVDKYEKAYR
RGLISDEERYEKVIETWTETTDKVTDALMGGLDRLNNIYIMAHSGARGSKNQIRQLAGMR
GLMANASGKTVEIPVKSNFREGLSVLEYFTSSHGARKGLADTAIRTAESGYLTRRLVDVS
QDVIVREIDCGTEDTTEIYAIKEGNEVIEEIYDRIVGRYTIDPILNPETGEVIVEADSMI
QEDEAETIVALGIEKIRIRTVLNCKTNHGVCSKCYGRNLATGKEVNIGEAVGIIAAQSIG
EPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAVITEVSGRVEIDETGKRKE
VNVIPEEGETQTYVIPYGSRLKVKQGQMLEAGDPLTQGFINPHDIVRVNGVKGVQEYIVK
EVQRVYRLQGVDVNDKHIEVIVRQMLSKVKVEDPGDTDLLPGGYEDVLTFNECNKDAIDK
GLRPAVAKRVLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKEDHLIGLKENVILGK
LIPAGTGMKKYRNIAVEKIED
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaacaatttcgagtcgataaaaatagcattggcttctccagaaaaaata
agacaatggtctaggggagaagttaaaaagccagaaactataaattaccgtactttaaaa
ccagaaaaagatggtcttttctgtgaaagaatatttggaccacaaaaagactgggagtgc
cactgtggtaaatatagaagagttagatataaaggtgtagtttgtgatagatgtggagta
gaagtaactaaatcaaaagtaagaagagagagaatgggacatatagagctagctgctcct
atgtctcacatctggtacttcaaaggtataccaagtagaatgggacttttacttgatatg
tcaccaagatcgttagaaaaaatattatactttgcctcatatgtggtagttgatccagga
gagactggattaaacgaaaaacaattgcttacagaaaaagaatacagaactgctcttgaa
aagtatggatatacttttactgtaggaatgggtgctgaagctgtaaagacattactacaa
aatatagatttagagcaacaaagtaaagacctaagagcggagttaaaagatagtacaggg
caaaagaaagttagaacaataagaagattagaagttgtagaggcatttaaaaagtctgga
aataaaccagaatggatgattttagatgcaataccagtaataccaccagatttaagacca
atggtacaacttgatggtggaagatttgcgacttcagacctaaatgatttatatagaaga
gttataaatagaaacaatagacttaaaagattattagagcttggagctccagatataatt
gtaagaaatgaaaaaagaatgcttcaagaagctgttgatgcattgatagataatggtaga
agaggtagacctgtaacaggacctggaaatagaccacttaaatctttatcagatatgtta
aaaggtaagcaaggtcgtttccgtcaaaacttacttggtaagcgtgttgactactcagga
cgttctgttatagttgttggaccagaacttaaattttatcaatgtggacttccaaagaag
atggcattagaattattcaagccatttgttatggataaattagttaaagaaggttatgca
cataatataaaaagtgcgaaatctatagtagaaaaagttaagccagaagtttgggatgtt
ttagaagatgttataaaaagtcatccagttcttcttaaccgtgcaccgactctacataga
ttaggtatacaagcatttgaaccaatcttagttgaaggtaaggctataaaactacatcct
cttgtatgtacagcttataatgcagactttgatggtgaccaaatggcagtccatgtacct
ttatcagtagaagcacaagcagaagcaagattcttaatgctttctgtaaataatatactt
gctcctaaagatggttcacctataactactccatctcaggatatggttttaggttgctat
tatctaacaatagaagcccaagatggagctaaaggaacaggtatggtatttaaagacttt
aatgaactattacttgcttattacaataaatcagttcatctacatgcattagtgaaactg
aaggtaacacttgaagatggaagaagttcattggttgaaagtactgttggtagatttata
tttaatgaaaatatacctcaagacttaggttttgtagatagaaaagaaaatccatttgca
cttgaagttgatttcttagcagataaaaaatctcttggtaaaataatagataaatgcttt
agaaaacacggaaatacagaaacagctgaattactagattatataaaagctctaggattt
aaatattctacattaggtggtataacagttgctgttgatgatatgagtgtcccagaagaa
aagaaagtatttatagctgaggcagaagctaaagttgataagtatgaaaaagcatacaga
agaggtctaatctctgatgaagaaagatatgaaaaagttatagagacatggacagaaaca
actgataaagttactgatgctcttatgggtggactagatagattaaataatatatatata
atggcacattcaggagccagaggttctaaaaaccaaattagacagctggcaggtatgcgt
ggtcttatggcaaatgcatctggtaaaacagttgagataccagttaaatctaatttccgt
gaaggtttatcagtactagaatactttacatcttcacatggagccagaaaaggtcttgcc
gatacagctatacgtacagctgaatctggatatttaacaagaagacttgttgatgtaagt
caagatgttattgtaagggaaatagattgtggaacagaagatactacagagatttatgct
ataaaagaaggaaatgaagttatagaagagatatatgatagaattgtaggaagatatact
atagaccctatattaaatcctgaaactggagaagttatagttgaggctgattcaatgata
caagaagatgaagcagaaactatagtagctttaggaattgaaaaaattaggataagaaca
gttcttaactgtaaaactaatcatggagtttgttctaagtgttatggtagaaacttggca
acaggaaaagaagttaatataggtgaagcagttggtataatagcagctcaatctatcggt
gagccgggtactcagcttacaatgcgtacattccatactggaggagttgcaggagctgat
ataactcaaggtctaccaagggttgaagaattatttgaagctagaaaaccaaaaggatta
gctgtaataactgaagtatctggtagagttgaaattgatgaaacaggaaagagaaaagaa
gtaaatgtaataccagaagaaggcgagactcaaacatatgtaattccatatggttctaga
ttaaaagttaagcaaggtcaaatgctagaggctggagaccctctaacacaaggatttata
aatcctcatgatatagtaagagtaaatggtgttaagggagttcaagaatatatagttaaa
gaagttcaaagagtgtatagacttcaaggggttgacgttaatgataagcatatagaagtt
atagtaagacaaatgctatctaaagtaaaagttgaagacccaggagatacagatttattg
ccaggtggatatgaagatgtattaacattcaatgaatgtaataaagatgctatagataaa
ggtctaagaccagcagttgctaaaagagttttacttggtataactaaagcatctcttgca
actgattcattcttatcagcagcttctttccaagaaacaacaagagtattaacagaggca
gcaataaaaggtaaagaagaccacttaataggacttaaagaaaatgttatattaggtaag
ttaataccagcaggaacaggaatgaagaaatatagaaatatagctgttgaaaaaattgaa
gattaa
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