Clostridioides difficile 630Derm: CD630DERM_04120
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Entry
CD630DERM_04120 CDS
T03785
Name
(GenBank) putative conjugative transfer proteinTn1549-like, CTn2-Orf5
Organism
pdf
Clostridioides difficile 630Derm
Pathway
pdf03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pdf00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
CD630DERM_04120
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
HigB-like_toxin
UvrD-helicase
DEAD
AAA_19
FtsK_SpoIIIE
DUF3970
Motif
Other DBs
NCBI-ProteinID:
CEJ96930
UniProt:
A0A381I5V2
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All DBs
Position
1:488367..490151
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AA seq
594 aa
AA seq
DB search
MIDKILKDIKGLFKVQDKVKFLKQNIPYLAFFYIGDIFSHHVRVYVGGDIIDKIFQGILE
INTMNFLPSIHPTDILMGVLVAVLIKFIVYTKGKNAKKFRQGKEYGSARWGNKKDIEPYM
DEKFQNNILLTQTERLTMNGRPANPKYARNKNVLVIGGSGSGKTRFFVKPNLMQMHSSYC
VTDPKGTIVLECGKMLEDNGYEIKILNTINFKKSMKYNPFAYIRSEKDILKLVQTIIANT
KGEGEKAGEDFWVKAEKLYYTALIGYIFYEAPREEKNFATLLDMIDASEVREDDETYMNP
IDRLFEALEKKEPTHFAVKQYKKYKLAAGKTAKSILISCGARLAPFDIQELRDLMQEDEL
ELDTLGDRKTALFVIISDTDDTFNFVVSIMYSQLFNLLCDKADDVYGGRLPIHVRCLLDE
FANIGLIPKFEKLIATIRSREISASIILQAQSQLKVIYKDNADTIVGNCDSTLFLGGKEK
TTLKELSETLGKETIDLYNTSETRSNQKSFGLNYQKTGKELMSQDEITVMDGSKCIFQLR
GVRPFLSDKFDITKHKNYKLLEDYDKKNVFNIESYMKRKGKAKLNRETVITRMQ
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgatagataagatattaaaggacatcaaaggcttatttaaggtgcaagataaggtaaag
tttctaaagcagaacattccctatcttgcatttttctatataggcgatatcttttcacat
catgtaagagtctatgtaggtggcgatattattgacaaaatctttcaagggatattagag
attaacactatgaactttcttccaagcattcatcctacggatattttaatgggagtgtta
gtagctgttttaatcaaatttatcgtatataccaaagggaaaaatgctaaaaagtttaga
caggggaaagagtatggctcagcaagatggggaaataaaaaagacatcgagccgtacatg
gatgaaaagtttcaaaacaatatcttgctcactcaaacagaacgattaactatgaacggt
agacctgctaatccaaagtatgcaagaaataagaatgtacttgtcataggaggatcagga
agtggcaagactcgattttttgtaaaaccaaaccttatgcaaatgcacagcagctattgt
gtaaccgatccaaaaggaacgatagttcttgagtgtggtaaaatgcttgaagataacgga
tatgagataaaaatcttaaataccatcaacttcaaaaagagtatgaaatacaatccattt
gcctatattcgttctgagaaagatatattaaaacttgttcagaccatcattgcaaacacc
aagggcgagggagaaaaagcaggtgaagatttttgggtaaaagccgaaaaactctactat
acagcacttatcggctatatcttctatgaagctccaagagaagaaaagaactttgcaacc
cttcttgatatgatagacgcttcggaagtcagagaagatgatgaaacctatatgaatccg
attgatagactctttgaagcattggaaaagaaagagcctacacactttgcggtgaagcaa
tataaaaagtacaagctggcagccggaaaaactgccaaatcgattcttataagctgtggt
gcaaggcttgctccctttgatattcaggaacttagggacttgatgcaagaagatgaactg
gagcttgatactcttggagatagaaagactgccctctttgttattatctctgatacagat
gatacctttaactttgtagtatctattatgtactctcagttatttaatcttttatgtgat
aaagcggatgatgtgtatggcggaagattacctatccatgtgagatgcttacttgatgaa
tttgcaaacattggtttaatacctaagtttgagaagttaattgcaacaatccgttccaga
gaaatatcagcaagcatcatacttcaagcacaatctcagctaaaggtaatctataaggat
aatgccgatacaatcgtaggtaactgtgatagtaccttgtttcttggtggcaaggaaaag
accacattaaaggaactttctgaaacactgggaaaagaaacgatagatttatataacaca
tcggaaacaaggagtaatcaaaagagctttggacttaattaccaaaagacaggtaaggag
cttatgagccaagatgagattactgtaatggacggtagcaaatgtatctttcagcttaga
ggtgtcagaccttttctttcagataaattcgatattacaaagcacaagaattataagcta
cttgaagattatgataagaagaatgtgtttaatattgagagctatatgaagcgaaaagga
aaagcaaaattaaatagagaaacggttattacaagaatgcagtaa
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