KEGG   Clostridioides difficile 630Derm: CD630DERM_12890
Entry
CD630DERM_12890   CDS       T03785                                 
Name
(GenBank) Ribonuclease J family protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
pdf  Clostridioides difficile 630Derm
Pathway
pdf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pdf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CD630DERM_12890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pdf03019]
    CD630DERM_12890
Messenger RNA biogenesis [BR:pdf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     CD630DERM_12890
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: CEJ97868
UniProt: A0A069A9S9
LinkDB
Position
1:1501987..1503663
AA seq 558 aa
MQLFKKNTNKIKVMALGGLNEVGKNMTVVEYKDEIIVIDAGLSFPEDEMLGVDIVIPDIT
YLVKNRDKIKGIFITHGHEDHIGALPYILKKINVPVYGARLSIGLIQVKLKEHKMNNVKL
NVIGPRQVIKLDNMEVEFLKNNHSIPDAYSIAIHTDQGIIYHTGDFKIDLTPIDGDVMDM
HRICELSKKGVLLMLADSTNAEKPGFTMSEKTVGVGLDELFAKGNGRRIIVATFASNIHR
LQQIINTAEKFNRKVAISGRSMVNVVGVAKELGYLDISDDMLIDLNDICKYEDSELVIIT
TGSQGEPMSALARMAFSEHKKVEIKSGDLVIISAHPIPGNEKLISRVINFLFEKGAEVVY
SDIADIHVSGHACQEELKLIHALVRPKFFMPAHGEYRMLKRHAEIAEQLGMDKENIFVMQ
TGDVLELDKNSAKVANRIQTGNILVDGLGVGDVGNIVLRDRKHLSEDGLMIVVVTISKDE
GKVLAGPDIISRGFVYVRESEDLMDGAKDIIKNVLNECEEKNIKEWAYLKNNIKENLKEY
LYQKTKRNPMILPIIMEV
NT seq 1677 nt   +upstreamnt  +downstreamnt
atgcaattgttcaaaaagaacaccaacaagataaaggtaatggccttgggtggacttaac
gaagttggaaaaaatatgactgttgttgagtataaagatgaaataattgttatagatgct
ggacttagttttccagaggatgaaatgttaggagtagatatagttataccagatataact
tatttagtaaaaaatagggataaaataaagggtatatttattacacatggacatgaagac
catataggagctcttccatatatattaaagaaaataaatgtacctgtatatggggcaaga
cttagtataggtcttatacaagtaaaacttaaagaacataaaatgaataatgttaagtta
aatgttataggtcctagacaagttataaagcttgataatatggaagtagagtttttgaaa
aataaccatagtataccagatgcttactctattgcaatacacacagaccaaggtataata
taccacacaggagattttaagattgacttgactcctattgatggagatgttatggatatg
catagaatctgtgagttgagcaaaaaaggagttcttttaatgctggcagatagtactaat
gcagaaaaaccaggatttactatgtctgaaaagactgttggggtaggtcttgacgaatta
tttgcaaaaggaaatggcagaagaattatagttgctacctttgcatccaacatacacaga
ttacaacaaataataaatactgctgaaaagtttaatagaaaagttgctatatcaggtcgc
tcaatggtcaatgtagttggagttgcaaaagaattaggatacctagatatttctgatgac
atgcttatagatttaaatgatatatgtaagtatgaagatagtgaattagtgataataaca
actggttcacaaggtgaacctatgtcagctcttgctagaatggctttttcagagcacaaa
aaagtagaaataaagagtggcgatttagttataatatctgctcatccaataccaggaaat
gaaaaattaatatcaagagtaatcaatttcttatttgaaaaaggagcagaagtagtatac
agtgatatagctgatatacacgtttctggacatgcctgtcaagaagaattaaaacttata
catgcattagttagaccaaagttttttatgccagctcatggtgaatatagaatgttaaaa
agacatgctgaaatagctgaacagcttggtatggataaagaaaatatttttgtcatgcaa
acaggagatgttttagaattagataaaaattctgctaaggtagcaaaccgtatacaaaca
ggaaacatattagttgatggtctaggagtaggcgatgtaggtaatatagttttaagggat
agaaagcatttatcagaagatggtcttatgatagttgtagttactatttccaaggatgag
ggtaaggtcttagcaggtccagatataatttccagaggattcgtatatgtaagagagtca
gaagatttaatggatggagcaaaggatataattaagaatgttctaaatgaatgtgaagag
aaaaatattaaagaatgggcttatttaaagaataatattaaagaaaacctaaaagaatat
ttatatcaaaaaactaaacgaaatccaatgatacttcctatcataatggaagtataa

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