Clostridioides difficile 630Derm: CD630DERM_26560
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Entry
CD630DERM_26560 CDS
T03785
Symbol
spoVD
Name
(GenBank) Stage V sporulation protein D(Sporulation-specific penicillin-binding protein)
KO
K08384
stage V sporulation protein D (sporulation-specific penicillin-binding protein)
Organism
pdf
Clostridioides difficile 630Derm
Pathway
pdf00550
Peptidoglycan biosynthesis
pdf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pdf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CD630DERM_26560 (spoVD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pdf01011
]
CD630DERM_26560 (spoVD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pdf01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
CD630DERM_26560 (spoVD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PASTA
BBS2_N
Motif
Other DBs
NCBI-ProteinID:
CEJ99279
LinkDB
All DBs
Position
1:complement(3021999..3023978)
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AA seq
659 aa
AA seq
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MRKVKRISKKRLVLVLILACALFFCLVIRTGYLQLMKGNWLSTKALEQQTRDIPIEPKRG
TIYDRNMKELAVSVTKYTVWCKPVEVEDKKEAAEKVAEILDEDYKDIYALISKKNMALVK
VKRWIDDDKASQIRDAKLSGIWVAEDNQRYYPYGNFAPYVLGHTSSDATGISGVEMQYDK
KLKGKPGKLIVSTDASGREIPQGMEKYYEPVQGNGLVLSIDEVIQHYTEKAVQKAYELNN
AKKVTAIAMNPKTGDILALASKPDYDPNDSRTPIYPYYQEELEKYNDKDKIKGYYQMWRN
PAVSDTYEPGSTFKLITSSSALEEGVIKDGEKFTCTGSVTVGGRKIKCWRHYRPHGTQEF
KQAVQNSCNPVFVELGSRLGVGKMYDYIESFGLMDKTGIDLPGEAKGILYNEKNVGPVEL
ATISFGQSISVTPIQLITAISSIANGGDLMQPRVVKSYTDNKGNITETVKPKKVRSVISK
ETSKKMLEIAESVVTEGGGKIAYIPGYRLGGKTGTAQKVIDGKYAPGKYICSFVGIAPCD
DPQIVVLAIVDEPTGVSAFGSTTAGPIVKEIMNDSLKYLGVKPVYKEEEKAEYEKKQVKV
PDVRNLKIGDAVKALEDAKLKPDLDADIELPEDTKVKDIFPKPGVKVNEDSSITLYFEN
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaaagtaaagaggataagtaagaaaaggctggtactcgttcttattctagcatgt
gcattgtttttttgccttgttattaggactgggtatctacaacttatgaagggaaattgg
ttgagtacaaaagcactagaacaacaaacaagagatataccaatagaacccaaaagagga
actatatatgatagaaatatgaaagagttagcagtaagtgtaactaagtatactgtttgg
tgtaaacctgtggaagtagaagataaaaaagaagcagccgaaaaggtagctgagattttg
gatgaagattataaagatatttacgctttaataagcaaaaaaaatatggctcttgtaaaa
gtaaaaagatggatagatgatgataaggcaagtcaaataagagatgctaaattaagtgga
atatgggtggcagaagataatcaaagatattacccatatgggaattttgcaccatatgtg
ttaggacatacttcttcagatgcaacaggtatatctggtgtagaaatgcaatatgataaa
aagttaaaaggaaagcctggaaaacttatagtaagtactgatgcttcaggaagagaaata
ccacaaggaatggaaaaatattatgagcctgtacaaggtaatggtcttgtgttgtctata
gatgaagtaattcaacactatactgaaaaagcagtacagaaagcttatgagttaaataat
gcaaaaaaggttactgcaatagctatgaaccctaaaacaggtgatatacttgctttagca
tcaaaaccagattatgaccctaatgactcaaggacgccaatatatccatattatcaagaa
gaacttgaaaaatataatgataaagataaaataaaaggctattatcaaatgtggagaaat
ccagcagtaagtgatacatatgaaccaggttctacatttaagcttattacatcttccagt
gctcttgaagaaggagtaattaaagatggagaaaaattcacatgtacaggtagtgtaact
gttggaggaagaaagattaaatgttggagacattacagacctcatggaacacaagaattt
aaacaagcagtacaaaactcttgcaacccagtatttgttgagttaggaagcagattaggt
gttggaaaaatgtatgattatatagaatcatttggtcttatggataagacaggtatagat
ttaccaggagaagctaagggaatactgtataacgaaaaaaatgtaggaccagttgaattg
gctacaatatcatttggtcaatctatatcagtaactccaatacaacttataacagctata
tcatcaatagctaatggtggagatttaatgcaaccaagagtggtaaaatcttatactgac
aataaaggaaatataactgaaacagtaaaaccaaaaaaagtaagaagtgttatatctaaa
gaaacatctaaaaaaatgttagaaattgcagaatcagttgtaactgaaggtggaggaaag
atagcatatataccaggttatagacttggtggtaaaacaggtacagctcaaaaagttata
gatggtaagtatgctccaggaaaatatatatgttcatttgttggaatagcaccttgtgat
gacccgcaaatagtagttcttgctattgttgacgaaccaacaggagtaagtgcatttggt
agtactacagcaggaccaatagtgaaagaaataatgaatgactctttaaaatatttggga
gttaaaccagtatataaagaagaagaaaaagctgagtatgaaaagaagcaagttaaagtg
ccagatgtaagaaatctaaaaataggagatgctgtaaaggcattggaggatgcgaagtta
aaaccagacttagatgcagatatagaacttccagaagatacaaaggtaaaggatatattc
ccaaaacctggagtaaaagttaatgaagactcaagtataaccctatattttgaaaactaa
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