Clostridioides difficile 630Derm: CD630DERM_33960
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Entry
CD630DERM_33960 CDS
T03785
Symbol
dnaE
Name
(GenBank) DNA polymerase III DnaE subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdf
Clostridioides difficile 630Derm
Pathway
pdf03030
DNA replication
pdf03430
Mismatch repair
pdf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CD630DERM_33960 (dnaE)
03430 Mismatch repair
CD630DERM_33960 (dnaE)
03440 Homologous recombination
CD630DERM_33960 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdf03032
]
CD630DERM_33960 (dnaE)
03400 DNA repair and recombination proteins [BR:
pdf03400
]
CD630DERM_33960 (dnaE)
Enzymes [BR:
pdf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CD630DERM_33960 (dnaE)
DNA replication proteins [BR:
pdf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CD630DERM_33960 (dnaE)
DNA repair and recombination proteins [BR:
pdf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CD630DERM_33960 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF4829
Motif
Other DBs
NCBI-ProteinID:
CEK00105
UniProt:
A0A9Q9QM20
LinkDB
All DBs
Position
1:complement(3974802..3978371)
Genome browser
AA seq
1189 aa
AA seq
DB search
MNKDFAHLHVHTEYSLLDGFSRVKKLIKRAKELNMSSIAITDHGCMFGVIDFYKTAIKEG
IKPIIGCEVYTAARGLRDKDPNYDKYQGHLVLLAKNMEGYKNLIKIVSTSYVEGFYYKPR
VDMEELKKHNKGIIALSACLAGDVARALMNRNYEKAKQFALDYRDIFGEENFFLEIQDHN
LPEQKEVNSGLVKLSKETGIPLVATNDVHYVNKEDSKIHDVLMCIQMGKTLNDPNRMRFG
SDEFYLKSREEMEELFPYALEAIDNTVKIADMCNVEFDFNTIHLPKYDVPEGYTPETYLR
ELCFNGLKERYDNPSNEILERLNYELDVIEKMGYVEYFLIVWDFINFSKENNIIVGPGRG
SAAGSIVAYTLKITDIDPIKYSLLFERFLNPERISMPDIDIDFCYERREEVIDYVKRKYG
DDHVAQIITFGTMGAKAAIRDVGRVLDIGYNKVDKVAKEIPFALGMTIDKALDTNPNLKE
LYDQDPETKEIINISKQIEGMLRHASTHAAGVVISKNPVDEYVPLYKHQDAITTQFTMTT
LEELGLLKMDFLGLRTLTVIRDTLDLIEKNRVIKNYTEKIDFSKMDYDDPKVYEMLSSGN
TLGVFQLESAGMRSFMKQLKPDNFEDIVAGISLFRPGPMDSIPAYIKNKSNPKDVTYLHE
KLKPIMEVTYGCLVYQEQVMQVVRDLGGYSYGRSDLVRRAMSKKKMDVMEEERQYFIHGK
FDEDGNIEIAGCIRNGVEEEIANKIFDDMIDFARYAFNKSHAAAYGVLAYETAYLKTYYP
VEFMAALITSVMGNTDKVVEYIRECKALEIDVLPPDINKSFSKFSVEGDNIRFGLAAVKN
VGVNIINNIIAERESNGLFVDLVDLVKRLDQKDTNKRVIESLIKCGAFDNISENRASLMA
GYESLLESVSMDRKKNVQGQISLFDAFGDSEEDSDFQQIYSLPKRQEYEERERLNLEKEV
LGMYVSGHPLSQFEKELQEKTSMDNGKLNSLKEEEESYLQMNETDVIMGGMIVTKTIKTT
KRNEIMAFIELEDLYGAIEIIVFPQLLQKYNVILNEDNIIYVKGTLSIKEGENAKLIARE
IKDINDDTDFADRNYNSGRTRNVENIKPESGKKLYLKIDSMSDTDTTNNIVEIAKQYPGN
DSIYLYPMDENINGKRKAYKMTGALTCICDEFINNLEELLPKDNIKVKA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagattttgctcatcttcatgtacatactgagtatagtttacttgatgggttt
tcgagggtgaaaaaacttataaaaagggctaaggaactaaacatgagctcaatagctata
actgaccatggttgtatgtttggtgttatagatttctacaaaacagctataaaagaagga
ataaagccaattatagggtgtgaagtctatacagctgcacgtggattgagagataaagac
ccaaactatgacaaatatcaaggacatttagttctgttagctaagaatatggaaggatat
aaaaatttaataaaaatagtttcaacttcatacgtagaaggtttttactataagcctaga
gttgacatggaagaacttaaaaaacataacaaagggattatagcactttctgcatgcctt
gcaggagatgtagcacgtgctttaatgaatagaaattatgaaaaagcaaaacaatttgct
cttgactacagagacatatttggagaagaaaatttctttttggagattcaagatcacaat
ttacctgagcaaaaagaagtaaactctggtttagtaaaattatcaaaagagactggtata
ccactagttgctactaatgatgttcactatgtaaataaagaagattcgaaaatacatgat
gtacttatgtgtattcaaatgggaaaaacattaaatgacccaaatagaatgagatttggt
agtgatgagttttatttaaaatcaagagaagaaatggaagaattatttccatatgcatta
gaggctattgacaatactgtgaaaatagctgatatgtgtaatgtggagtttgattttaat
actatacatcttcctaagtatgatgttccagaaggatatacaccagaaacttatttaagg
gagttgtgttttaatggattaaaagagagatatgataatcctagcaatgagatactagag
agattaaattatgaattagatgtaattgaaaaaatgggttatgtagagtattttttaatt
gtttgggattttataaatttttctaaagaaaataatattatagtaggaccaggtagaggt
agtgcggctggttcgatagtagcatatacacttaagataactgatatagacccaataaag
tactctctattatttgagcgttttttaaatccagaacgtatatccatgccagatatagat
atagatttttgttatgagagaagagaagaagttatagattatgtaaagagaaaatatggt
gatgaccatgtagcccagataataacttttggaacaatgggtgcaaaagctgcaataaga
gatgttggaagggtattggatataggctacaataaagttgacaaggtagccaaggaaata
ccatttgctttaggaatgacaatagataaggccctagatacgaatcctaatcttaaagaa
ttgtatgaccaagacccggaaacaaaagaaataataaatatatcaaaacagatagaggga
atgctaagacatgcttctactcatgcagcaggagttgttatatcaaaaaatcccgtagat
gaatatgtacctttgtacaaacatcaagatgcaatcacaacacagtttactatgacaaca
cttgaagaacttgggcttttaaagatggattttcttgggctaagaactcttacagttata
agagatactcttgatttaatagaaaaaaatagagttataaaaaactacacagaaaaaata
gacttttcaaagatggattatgacgacccgaaagtatatgaaatgctttcatcaggaaat
acactaggggtgtttcaattggagagtgctggcatgagaagttttatgaaacagctaaaa
ccagacaattttgaagatattgtagcgggaatatccctatttagaccaggtccaatggat
tctatacctgcatatataaaaaataaaagcaacccaaaagatgtaacatatctacatgaa
aaattaaagcctataatggaagttacatatggttgtttggtatatcaagagcaggttatg
caggtcgttagagatttaggtggttatagttacggacgaagtgacctagttagaagagcc
atgagtaagaaaaagatggatgtgatggaagaagaaagacaatattttattcatggtaaa
tttgatgaagatggtaatatagaaattgcagggtgtatcagaaatggtgtagaagaggaa
atagctaataaaatatttgatgatatgatagacttcgctagatatgcatttaataaatca
catgcagctgcatatggggttttagcatatgagacagcttatctaaaaacatattatcca
gttgaatttatggcagcattgataaccagtgtaatgggaaatactgataaggtagttgag
tatataagagaatgtaaagcactagaaatagatgtattacctccagatataaacaaaagt
ttttcaaagttttcagttgaaggcgacaatataagatttggtctagcagctgtaaaaaat
gttggtgtaaatataataaacaatataatcgctgaaagagaatctaatggattatttgta
gatttagtagatttagtcaaaagattagaccaaaaagatacaaataagagagtaatagaa
agtctaataaaatgtggagcttttgataatataagtgaaaatagagctagtctgatggct
ggttatgaaagtttattagaaagtgtatctatggatagaaagaaaaatgttcaaggtcaa
atttctttatttgatgcttttggagatagtgaggaagatagtgattttcaacaaatatac
agtttacctaaaaggcaagagtatgaagaaagagagagacttaaccttgaaaaagaagtc
ttgggaatgtatgtaagtggacatcctttatcacaatttgaaaaagaactacaagaaaaa
acatctatggataatggaaaattaaattcattaaaagaggaagaagagtcatacctacaa
atgaatgaaacagatgttataatgggtggaatgattgtaactaaaaccattaaaacaaca
aaacgaaatgaaattatggcatttattgaattagaagatttgtatggtgctatagaaata
atagtttttcctcaattattacaaaagtataatgtcattttgaatgaagataatataata
tatgtaaaaggaacattaagtataaaagaaggcgaaaatgcaaaacttatagctagagag
ataaaagatataaatgatgatactgactttgcagatagaaactacaattcaggaagaact
agaaatgtagaaaatattaagccagaaagtggtaaaaaattgtatttgaaaatagatagt
atgtctgatactgatacaactaataatattgtagaaatagccaaacaatatccaggtaat
gacagtatatacttgtaccctatggatgaaaatataaatggtaaacgtaaagcatataaa
atgaccggggcattgacttgtatatgtgatgaatttataaataacttagaagagttactt
cctaaagataacataaaagtaaaagcttga
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